BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949340

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21380.1 | Symbols:  | Kinesin motor family protein | chr2:9...   248    4e-65
  AT4G39050.1 | Symbols:  | Kinesin motor family protein | chr4:1...   174    6e-43


> AT2G21380.1 | Symbols:  | Kinesin motor family protein | chr2:9141631-9149309 
FORWARD LENGTH=3614
Length=3614

 Score =  248 bits (134),  Expect = 4e-65
 Identities = 192/218 (88%), Gaps = 11/218 (5%)
 Strand=Plus/Plus

Query  282   TTTGATTGACTTAGCTGGATCTGAGAGTTCCACGAGTTCCGAAACTAAGATAACGGGATT  341
             ||||||||||||||||||||||||||||| | | |      ||||| ||| ||||||| |
Sbjct  1091  TTTGATTGACTTAGCTGGATCTGAGAGTT-C-C-A------AAACTGAGACAACGGGACT  1141

Query  342   GAGGAGGAAAGAGGGTGCATACATCAACAATAGTCTTCTGACTCTTGGAACTGTGATTGG  401
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1142  GAGGAGGAAAGAGGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTGATTGG  1201

Query  402   AAAACTGTCTGACGGCAGGACAACTCATGTCCCATTTCGAGACTCTACGCTAACTTGTCT  461
             ||||||| |||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct  1202  AAAACTGACTGAGGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCT  1261

Query  462   TCTCCAATCTTCATTGTGTGGGCACTAG-CATATATCG  498
             ||| ||||||||| || ||||||| | | ||| |||||
Sbjct  1262  TCTGCAATCTTCACTGAGTGGGCA-TGGGCATGTATCG  1298


> AT4G39050.1 | Symbols:  | Kinesin motor family protein | chr4:18193135-18200697 
FORWARD LENGTH=3698
Length=3698

 Score =  174 bits (94),  Expect = 6e-43
 Identities = 166/198 (84%), Gaps = 15/198 (8%)
 Strand=Plus/Plus

Query  282   TTTGATTGACTTAGCTGGATCTGAGAGTTCCACGAGTTCCGAAACT-AAGATAACGGGAT  340
             ||||||||||||||||||||||||||||||   ||      ||||| || | ||| ||||
Sbjct  1281  TTTGATTGACTTAGCTGGATCTGAGAGTTC---GA------AAACTGAA-ACAACTGGAT  1330

Query  341   TGAGGAGGAAAGAGGGTGCATACATCAACAATAGTCTTCTGACTCTTGGAACTGTGATTG  400
             |||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct  1331  TGAGGAGGAAGGAGGGTTCATACATCAACAAGAGTCTTCTAACTCTTGGAACTGTGATTG  1390

Query  401   GAAAACTGTC-TGACGGCA-GGACAACTCATGTCCCATTTCGAGACTCTACGCTAACTTG  458
             ||||||| |  ||| || | || |||||||  | |||| ||| ||||||| ||||||| |
Sbjct  1391  GAAAACT-TAGTGAGGGTAAGG-CAACTCACATTCCATATCGTGACTCTAAGCTAACTCG  1448

Query  459   TCTTCTCCAATCTTCATT  476
             |||||| |||||||||||
Sbjct  1449  TCTTCTGCAATCTTCATT  1466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5