BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949350

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05812.1 | Symbols:  | Potential natural antisense gene, loc...   344    4e-94
  AT2G05810.1 | Symbols:  | ARM repeat superfamily protein | chr2...   344    4e-94


> AT2G05812.1 | Symbols:  | Potential natural antisense gene, locus 
overlaps with AT2G05810 | chr2:2215236-2217150 FORWARD 
LENGTH=1915
Length=1915

 Score =  344 bits (186),  Expect = 4e-94
 Identities = 251/281 (89%), Gaps = 10/281 (4%)
 Strand=Plus/Minus

Query  185  AGCTTACGGTGGCGTAACCATATTAATCAAAGCTTGTAGATCAGGATCTGAAGAAGTACA  244
            ||||||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct  887  AGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACAAGTACA  828

Query  245  AGAACACATCGCTGGTGCTATTAGCAATATCTCCGCCGTGGAAGAAATCAGAACAAC-TC  303
            ||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| | 
Sbjct  827  AGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAACAACAT-  769

Query  304  TAGCTGAAGAAGGAGCTGTACCGGTTCTTCTCCCTCTCTTAATCTCCGGTTCATCGTTGG  363
            ||||||||||||||||| ||||||||||| |||  |||||||||||||||||||| | ||
Sbjct  768  TAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATCATCGG  709

Query  364  TTA-AAGA-AAAGACGGTGAATTTCATCTCCTTAATATCATCTTCCGGTGAGTATTTCAG  421
             || |||| ||| || | ||||||||||||||| || ||||||||||||||||||| |||
Sbjct  708  -TACAAGAGAAA-ACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTATTACAG  651

Query  422  AGATTTGATTGTTAGAGAAAGAGGA---TTACAGATT-TGA  458
            |||||||||||||||||||||||||   ||||||||| |||
Sbjct  650  AGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGA  610


> AT2G05810.1 | Symbols:  | ARM repeat superfamily protein | chr2:2214012-2217159 
REVERSE LENGTH=2282
Length=2282

 Score =  344 bits (186),  Expect = 4e-94
 Identities = 251/281 (89%), Gaps = 10/281 (4%)
 Strand=Plus/Plus

Query  185   AGCTTACGGTGGCGTAACCATATTAATCAAAGCTTGTAGATCAGGATCTGAAGAAGTACA  244
             ||||||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct  1038  AGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACAAGTACA  1097

Query  245   AGAACACATCGCTGGTGCTATTAGCAATATCTCCGCCGTGGAAGAAATCAGAACAAC-TC  303
             ||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| | 
Sbjct  1098  AGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAACAACAT-  1156

Query  304   TAGCTGAAGAAGGAGCTGTACCGGTTCTTCTCCCTCTCTTAATCTCCGGTTCATCGTTGG  363
             ||||||||||||||||| ||||||||||| |||  |||||||||||||||||||| | ||
Sbjct  1157  TAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATCATCGG  1216

Query  364   TTA-AAGA-AAAGACGGTGAATTTCATCTCCTTAATATCATCTTCCGGTGAGTATTTCAG  421
             | | |||| ||| || | ||||||||||||||| || ||||||||||||||||||| |||
Sbjct  1217  T-ACAAGAGAAA-ACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTATTACAG  1274

Query  422   AGATTTGATTGTTAGAGAAAGAGGA---TTACAGATT-TGA  458
             |||||||||||||||||||||||||   ||||||||| |||
Sbjct  1275  AGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGA  1315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5