BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949350 Length=484 Score E Sequences producing significant alignments: (Bits) Value AT2G05812.1 | Symbols: | Potential natural antisense gene, loc... 344 4e-94 AT2G05810.1 | Symbols: | ARM repeat superfamily protein | chr2... 344 4e-94 > AT2G05812.1 | Symbols: | Potential natural antisense gene, locus overlaps with AT2G05810 | chr2:2215236-2217150 FORWARD LENGTH=1915 Length=1915 Score = 344 bits (186), Expect = 4e-94 Identities = 251/281 (89%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 185 AGCTTACGGTGGCGTAACCATATTAATCAAAGCTTGTAGATCAGGATCTGAAGAAGTACA 244 ||||||||| ||||||||| |||||||| |||||||||||||||||||| || ||||||| Sbjct 887 AGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACAAGTACA 828 Query 245 AGAACACATCGCTGGTGCTATTAGCAATATCTCCGCCGTGGAAGAAATCAGAACAAC-TC 303 ||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| | Sbjct 827 AGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAACAACAT- 769 Query 304 TAGCTGAAGAAGGAGCTGTACCGGTTCTTCTCCCTCTCTTAATCTCCGGTTCATCGTTGG 363 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| | || Sbjct 768 TAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATCATCGG 709 Query 364 TTA-AAGA-AAAGACGGTGAATTTCATCTCCTTAATATCATCTTCCGGTGAGTATTTCAG 421 || |||| ||| || | ||||||||||||||| || ||||||||||||||||||| ||| Sbjct 708 -TACAAGAGAAA-ACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTATTACAG 651 Query 422 AGATTTGATTGTTAGAGAAAGAGGA---TTACAGATT-TGA 458 ||||||||||||||||||||||||| ||||||||| ||| Sbjct 650 AGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGA 610 > AT2G05810.1 | Symbols: | ARM repeat superfamily protein | chr2:2214012-2217159 REVERSE LENGTH=2282 Length=2282 Score = 344 bits (186), Expect = 4e-94 Identities = 251/281 (89%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 185 AGCTTACGGTGGCGTAACCATATTAATCAAAGCTTGTAGATCAGGATCTGAAGAAGTACA 244 ||||||||| ||||||||| |||||||| |||||||||||||||||||| || ||||||| Sbjct 1038 AGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACAAGTACA 1097 Query 245 AGAACACATCGCTGGTGCTATTAGCAATATCTCCGCCGTGGAAGAAATCAGAACAAC-TC 303 ||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| | Sbjct 1098 AGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAACAACAT- 1156 Query 304 TAGCTGAAGAAGGAGCTGTACCGGTTCTTCTCCCTCTCTTAATCTCCGGTTCATCGTTGG 363 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| | || Sbjct 1157 TAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATCATCGG 1216 Query 364 TTA-AAGA-AAAGACGGTGAATTTCATCTCCTTAATATCATCTTCCGGTGAGTATTTCAG 421 | | |||| ||| || | ||||||||||||||| || ||||||||||||||||||| ||| Sbjct 1217 T-ACAAGAGAAA-ACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTATTACAG 1274 Query 422 AGATTTGATTGTTAGAGAAAGAGGA---TTACAGATT-TGA 458 ||||||||||||||||||||||||| ||||||||| ||| Sbjct 1275 AGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGA 1315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23057473473 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5