BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949356
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1203 0.0
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 351 6e-96
> AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311
Score = 1203 bits (651), Expect = 0.0
Identities = 1000/1163 (86%), Gaps = 45/1163 (4%)
Strand=Plus/Plus
Query 42 TGGAAGAAGCATAAGCCGTCGAAATATCCCACCTCGAACCCGTCACTTCCATATGATTTG 101
||||||||| | |||| |||||| || | || ||||| |||||||||||||||||| |
Sbjct 74 TGGAAGAAGAAGAAGCTGTCGAACGATACGACTTCGAATCCGTCACTTCCATATGATGTA 133
Query 102 ATAGTGAGCATATTAGCCCGCGTCTCGAGATCGTATTACCCAATTCTCTCCTTAGTCTCT 161
||| ||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 134 ATACTGATCATCTTAGCCCGCGTCTCGAGATCGTATTACACAAATCTCTCCTTAGTCTCC 193
Query 162 AAAATCTTCCGATCGATCCTTGCTTCACCGGAGCTTTACCAAACCGGAACCCTCTTAGGT 221
|||| ||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 194 AAAAGCTTCCGATCAATCCTTACTTCACCGGAGCTTTACAAAACCCGAACCCTCTTAGG- 252
Query 222 C-GAATCGAGACCTTTCTCTATGTTTGCTTACGCTTCCTTGATGAAGCTAACCCTGGCTG 280
| || ||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 253 CAAAACCGAGAATTTTCTCTATGTTTGCTTACGCTTCCCTGATGAAGCTAATCCTCGCTG 312
Query 281 GTTCAATCTTTACCGGAAATCTAATCAAACCCTAACCGATCAAACCACTaagaagaagaa 340
||||| ||| ||| ||||| |||||||||||||||||||||| |||||| |||||| |
Sbjct 313 GTTCACTCTCTACAGGAAACCTAATCAAACCCTAACCGATCACACCACT---AAGAAG-A 368
Query 341 gacgaagaagaagaagaagaagaagaaggagaagTCAAGTGTTAATCTTTTGGCTCCAAT 400
| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 369 -A-GAAGAAGAAGAAGAAGAAG--G-AGGAGAAGTCAAGTGTTAATCTGTTGGCTCCAAT 423
Query 401 CTCAGTCCCCAACTCTCCTCCTGTGGAATGGTCAGCTATCATATCCGTTGGTCATAATCT 460
|||| | | ||| |||| ||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 424 CTCAATTCTCAATTCTCATCCTGTGGAATGGTCAGCTATCATATCTGTTGATCATTATCT 483
Query 461 CTACGCCATTGGTGCAGATATCGAAAAGGCTCCTTACTCTAACGTCCCTTTTCTTGATTG 520
|||||||||| ||||||| |||||||||||||| ||||||||||| |||| || |||||
Sbjct 484 CTACGCCATTAGTGCAGACATCGAAAAGGCTCCGTACTCTAACGTTCCTTACCTAGATTG 543
Query 521 TCGAACTCACACTTGGCATGAAGCTCCAAGAATGAGACTGGCTCACACTAGTAGTGTATT 580
|||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 544 TCGAACTCACACTTGGAATGAAGCTCCAAGAATGAGATTGGCTCACACTAATAGTGAATT 603
Query 581 TGAAGGAAGAATGTATTTACCAGGAAGCTCTGAAAAG--CATGATTCTTTGAACTGTGTT 638
|||||||| | |||||||||||||||||| || |||| || ||||||||||||||||||
Sbjct 604 TGAAGGAATAGTGTATTTACCAGGAAGCTTTG-AAAGTCCA-GATTCTTTGAACTGTGTT 661
Query 639 GAAGTTTACAACACAAAGACTCAAACTTGGAAAACCGGTGCCGCCCGAAAAACGGATATT 698
||||| |||||||||| |||||| |||||| ||||||||||| |||||||||||||| ||
Sbjct 662 GAAGTGTACAACACAATGACTCAGACTTGG-AAACCGGTGCCCCCCGAAAAACGGATGTT 720
Query 699 CGAATTGGAAAATTTGGAAGGAAAGGTTTACTACAAGA-ATTTGATTTAGTGTCT---GC 754
| ||||||||||||||||| |||| |||||||||||| ||| |||||| ||| ||
Sbjct 721 CAAATTGGAAAATTTGGAAAAAAAGATTTACTACAAGAGCTTTCATTTAGACTCTAGGGC 780
Query 755 TGGGAAAGGTCTGA-CTTTGAGCTCTAAGTCGAAGAATTTGACATGCGGATTGG-A-TA- 810
|||||||||||| | ||||||||| ||| |||||| |||||||||| ||||||| | ||
Sbjct 781 TGGGAAAGGTCT-ATCTTTGAGCTATAAATCGAAGCATTTGACATGTGGATTGGTAGTAT 839
Query 811 CAGAT----T-TATATCGATA--TT---T-TTCTTGTATGATAGAGAACATAACCTATTG 859
||| | || || ||| || | |||||||||||||||||| ||| ||||||
Sbjct 840 TGGATACGGTGGAT-TC-ATATCTTCGCTCTTCTTGTATGATAGAGAATATAGCCTATTT 897
Query 860 TTATTGGGATGGAAATTTTGTTTGGAGAAAATTTGAGGGT---ATAGC-AGTTAAC-AGA 914
|||| | | ||||||||| |||||||| | |||| ||| ||| | ||| || ||
Sbjct 898 TTATCGTAAAGGAAATTTTATTTGGAGAGGACTTGACGGTAAGATA-CTGGTTTACGGGA 956
Query 915 ATGTTAAAGGGTATAGAAGGGCTACCTAAGTTTTCTAGATATTGTACTGTTAAATTGGCG 974
| || ||||| |||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 957 A-AATAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCAATTGGCG 1015
Query 975 GAGTATGGCAGCAAGCTGGTGATTTTGTGGGACAAGTGTGTAGCTGCCAGTGGGTATAAG 1034
|| |||||| | ||||||||| ||||||||||||||| |||| |||| ||||||||||||
Sbjct 1016 GAATATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAG 1075
Query 1035 GAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATGCGCAACAGTGAAGAGATTTGG 1094
|||||||||||||||||||||||||||||||| |||| || ||| || |||||||||||
Sbjct 1076 GAGAAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGG 1135
Query 1095 GGGAAGGTCGAGTGGTTCCATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGT 1154
||||| || |||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1136 GGGAACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGT 1195
Query 1155 GCTACTGCTGCTACTCTTTGATT 1177
|||||||||||||||||||||||
Sbjct 1196 GCTACTGCTGCTACTCTTTGATT 1218
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 351 bits (190), Expect = 6e-96
Identities = 248/276 (90%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 918 TTAAAGGGTATAGAAGGGCTACCTAAGTTTTCTAGATATTGTACTGTTAAATTGGCGGAG 977
||| ||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 913 TTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGAA 972
Query 978 TATGGCAGCAAGCTGG-TGATTTTGTGGGACAAGTGTGTAGCTGCCAGTGGGTATAAGGA 1036
|||||| | ||||||| || ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 973 TATGGCGGGAAGCTGGTTG-TTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGA 1031
Query 1037 GAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATGCGCAACAGTGAAGAGATTTGGGG 1096
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1032 GAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGG 1091
Query 1097 GAAGGTCGAGTGGTTCCATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTGC 1156
||||||||||||||| ||||||| |||| ||||||||||||||| ||| || | |||||
Sbjct 1092 GAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTGTGC 1151
Query 1157 TAC-TGCTGCTACTCTTTGATTAATGGCTCATGACA 1191
|| | |||||||| ||||||| ||| |||| ||||
Sbjct 1152 TAAAT-CTGCTACTGTTTGATTGATGACTCAGGACA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5