BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949357
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 957 0.0
AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 608 3e-173
AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superf... 283 2e-75
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 957 bits (518), Expect = 0.0
Identities = 921/1110 (83%), Gaps = 50/1110 (5%)
Strand=Plus/Plus
Query 95 AATCGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCT 154
||||| || ||||||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 89 AATCGTCCCCAAATCCGTCACTTCCAGAAGATTTGATAGTGAGCATCTTAGCCCGCGTCT 148
Query 155 CGAGATCGTATCACCCAATTCTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTT 214
||||||||||| || ||| ||||||| ||||||| |||| ||||||||| |||||| |||
Sbjct 149 CGAGATCGTATTACACAAATCTCTCCGTAGTCTCAAAAACCTTCCGATCAATCCTTACTT 208
Query 215 CACCGGAGCTATACCAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGT 274
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 209 CACCGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAACCCGAGACTTTTCTCTATGTCT 268
Query 275 GCTTACGCTTCCCTAATGAAGCTAACCCTCGCTGGTTCACTCTTTACCGGAAACCTAATC 334
|| ||||||||||| |||||||||| ||||| ||||| | ||| |||||||| |||||||
Sbjct 269 GCCTACGCTTCCCTGATGAAGCTAATCCTCGTTGGTTGATTCTCTACCGGAAGCCTAATC 328
Query 335 AAACCCTAACTaagaagaagaagaagaagaagaaagaGGATTCAAGTG-GCAATCTTTTG 393
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 329 AAACCCTAACT------AAGAAGAAGAAGAAGAAAGAGGATTCAAGTGTTC-ATCTTTTG 381
Query 394 GCTCCAATTTCAATTCTCAACTCTCCTCCTTTGGAATGGTCAAGTCTCA-TCGCTGTTGG 452
||||||||| |||||||||| ||||| || |||||||||||||||| | ||||||||||
Sbjct 382 GCTCCAATTCCAATTCTCAATTCTCCAACTGTGGAATGGTCAAGTCT-AGTCGCTGTTGG 440
Query 453 TTCTTATCTTTACGCCATTACCGCAGCCATCGACGATTCTCCATGCTCTAACGTTTGGTA 512
||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 441 TTCTTATCTGTACGCCATTACCGCAGACATCAAAGATTCTCCATGCTCTAACGTTTGGTA 500
Query 513 CCTTGACTGTCGAACTCACACTTGGCTTGATTCTCCAAGAATGCGAATTGCTCACACTGA 572
||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| | |
Sbjct 501 CCTTGACTGTCGAACGCACACTTGGCTTGATTCTCCAAGATTGCGACTGGCTCACA-TCA 559
Query 573 -TACTC-CATATGATGGGAATGT-GTATTTAGCAGAAAGCTCTGAAA-GTCCAGATTCTT 628
|| | | | | |||||| | |||||| ||| ||||||||||| | ||||||||||
Sbjct 560 ATAGTGACTT-TAATGGGAG-GACGTATTTCCCAGGAAGCTCTGAAAAG-CCAGATTCTT 616
Query 629 TGAACTGTGTTGAAGTGTACAACACAGAGACTCA-AGCTTGGAATCCTGTGCCGCCC-AA 686
|||||||||||||||||||||||||| | ||||| | |||||||||| ||||| ||| ||
Sbjct 617 TGAACTGTGTTGAAGTGTACAACACAAATACTCAGA-CTTGGAATCCCGTGCCTCCCCAA 675
Query 687 AAGACGGATATTCGAATTAGAAAATTTGGAAGGAACGATTTACATGAACC--TT--CAAG 742
|| ||| | | || |||| | |||| ||||||||| ||||||||| | || || ||||
Sbjct 676 AA-ACGAAAACTCAAATTCGGAAATATGGAAGGAAAGATTTACAT-ACCCCCTTGTCAAG 733
Query 743 TAATGTCTCCTTGGCAGGCTACGGCTTTTAAGCCAAAGGTTTCGACAAGTGAATTGGTAG 802
| | || | || ||||| |||| | || |||||||||| |||| | ||| |||||
Sbjct 734 -A--GAATCATAGGAAGGCTGTGGCTCTAAACCCAAAGGTTTTGACATGGGAAGCGGTAG 790
Query 803 GATTGCATATGATTTTGGGTCGGGTTTCTTATTGTACGATTGATAA-AGTAGACTATCAT 861
||||| || || ||||| | ||| ||||| ||||| ||| | || | ||| |||| |
Sbjct 791 GATTGGGTACGAATTTGGATAGGGGTTCTTTTTGTATGATAGGGAACA-TAGCCTATTGT 849
Query 862 TATGCCCCTCATT---A--TCCCCCTGG-TGTAAATCTTACA-TG-GAGAACAAATAACA 913
|||| |||| | | | | ||| || || | | ||| || | ||| | | |
Sbjct 850 TATGACCCT-AGTGGGAAGTTTAGATGGATG-AATTGTAACACTGCG-GAAGGAG-A-CT 904
Query 914 CTTCCGGAATTTTAGAAGGTTTAGAAGGGTTACCTCAGTTTGCTAGTTCTAGTACTGTTA 973
| || || ||| |||||||||||| ||||| |||||||||| | |||||||||||
Sbjct 905 GGAGCAGA-TT--AGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTA 961
Query 974 TATTAGCAGATTATGGTGGTAAGCTGGTAGTTTTGTGGGATAAGTATG-AGCAGGGATTT 1032
|||||| || ||||| || |||||||| ||||||||||| ||||||| ||| | | |
Sbjct 962 AATTAGCGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTG 1021
Query 1033 GGATATAAGAAGAAGATGATTTGGTGTGCAGAGATTTCACTTGAAAAACGCAACACTGAA 1092
|| |||||| |||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1022 GG-TATAAGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAA 1080
Query 1093 GAGATTTGGGGGAAGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAG 1152
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 GAGATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAA 1140
Query 1153 TTTGTGTATGCTAAATCTGTTACTGTTTGA 1182
|| || | ||||||||||| ||||||||||
Sbjct 1141 TTCGTCTGTGCTAAATCTGCTACTGTTTGA 1170
> AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311
Score = 608 bits (329), Expect = 3e-173
Identities = 553/657 (84%), Gaps = 32/657 (5%)
Strand=Plus/Plus
Query 98 CGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCGA 157
|||| || ||||| ||||||||| ||||| | || ||| ||||||||||||||||||||
Sbjct 102 CGACTTCGAATCCGTCACTTCCATATGATGTAATACTGATCATCTTAGCCCGCGTCTCGA 161
Query 158 GATCGTATCACCCAATTCTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCAC 217
|||||||| || ||| |||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 162 GATCGTATTACACAAATCTCTCCTTAGTCTCCAAAAGCTTCCGATCAATCCTTACTTCAC 221
Query 218 CGGAGCTATACCAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCT 277
||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 222 CGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAAACCGAGAATTTTCTCTATGTTTGCT 281
Query 278 TACGCTTCCCTAATGAAGCTAACCCTCGCTGGTTCACTCTTTACCGGAAACCTAATCAAA 337
||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 282 TACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACAGGAAACCTAATCAAA 341
Query 338 --C---CC--T---A--ACTaagaagaagaagaagaagaag-a-aa-ga-G-G-ATTCAA 379
| || | | |||||||||||||||||||||||| | || || | | | ||||
Sbjct 342 CCCTAACCGATCACACCACTAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGTCAA 401
Query 380 GTGGCAATCTTTTGGCTCCAATTTCAATTCTCAACTCTCCTCCTTTGGAATGGTCAAG-T 438
||| ||||| ||||||||||| ||||||||||| |||| |||| |||||||||| || |
Sbjct 402 GTGTTAATCTGTTGGCTCCAATCTCAATTCTCAATTCTCATCCTGTGGAATGGTC-AGCT 460
Query 439 CTCATCGCTGTTGGTTC-TTATCTTTACGCCATTACCGCAGCCATCGACGATTCTCCATG 497
|||| ||||| | || |||||| |||||||||| |||| |||||| | |||| |
Sbjct 461 ATCATATCTGTT-GATCATTATCTCTACGCCATTAGTGCAGACATCGAAAAGGCTCCGTA 519
Query 498 CTCTAACGTTTGGTACCTTGACTGTCGAACTCACACTTGGCTTGATTCTCCAAGAATGCG 557
|||||||||| ||||| || |||||||||||||||||| ||| ||||||||||| |
Sbjct 520 CTCTAACGTTCCTTACCTAGATTGTCGAACTCACACTTGGAATGAAGCTCCAAGAATGAG 579
Query 558 AATT-GCTCACACTGATACTCCATATGATGGGAAT-GTGTATTTAGCAGAAAGCTCTGAA 615
||| ||||||||| ||| | || ||| ||||| ||||||||| ||| ||||| ||||
Sbjct 580 -ATTGGCTCACACTAATAGTGAATTTGA-AGGAATAGTGTATTTACCAGGAAGCTTTGAA 637
Query 616 AGTCCAGATTCTTTGAACTGTGTTGAAGTGTACAACACAGA-GACTCA-AGCTTGGAATC 673
||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| |
Sbjct 638 AGTCCAGATTCTTTGAACTGTGTTGAAGTGTACAACACA-ATGACTCAGA-CTTGGAAAC 695
Query 674 CTGTGCCGCCC-AAAAGACGGATATTCGAATTAGAAAATTTGGAAGGAACGATTTAC 729
| ||||| ||| |||| |||||| ||| |||| |||||||||||| || |||||||
Sbjct 696 CGGTGCCCCCCGAAAA-ACGGATGTTCAAATTGGAAAATTTGGAAAAAAAGATTTAC 751
Score = 209 bits (113), Expect = 4e-53
Identities = 214/262 (82%), Gaps = 10/262 (4%)
Strand=Plus/Plus
Query 926 TAGAAGGTTTAGAAGGGTTACCTCAGTTTGCTAGTTCTAGTACTGTT-ATATTAGCAGAT 984
|||| |||||||||||| ||||| ||||| |||| | | || |||| | ||| || ||
Sbjct 960 TAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAA 1018
Query 985 TATGGTGGTAAGCTGGTAGTTTTGTGGGATAAGTATG-AGCAGGGATTTGGATATAAGAA 1043
||||| || |||||||| ||||||||||| ||||||| | | | || ||| |||||| |
Sbjct 1019 TATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGA-GTGGGTATAAGGA 1077
Query 1044 GAAGATGATTTGGTGTGCAGAGATTTCACTTGAAAAACGCAACACTGAAGAGATTTGGGG 1103
||||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||
Sbjct 1078 GAAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGG 1137
Query 1104 GAAGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAG-T-TTGTGTAT 1161
||| || |||||||| ||||| || |||||||||||||||||||| || | ||||||
Sbjct 1138 GAACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGT-- 1195
Query 1162 GCTAAAT-CTGTTACTGTTTGA 1182
|||| | ||| |||| |||||
Sbjct 1196 GCTAC-TGCTGCTACTCTTTGA 1216
> AT2G20380.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:8794818-8795980 REVERSE LENGTH=1047
Length=1047
Score = 283 bits (153), Expect = 2e-75
Identities = 305/374 (82%), Gaps = 27/374 (7%)
Strand=Plus/Plus
Query 112 TCACTTCCAG-ATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCG-AGATCGTATCACC 169
|||||||| | |||||||| |||||| ||||||||||||| ||||| | ||| ||| |||
Sbjct 55 TCACTTCC-GAATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCA-ATCATATTACC 112
Query 170 C-AATTCTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCACCGGAGCTATAC 228
| || ||||||||||||||||||| |||| || | |||||||||||||||||||| |||
Sbjct 113 CTAA-GCTCTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTAC 171
Query 229 CAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCTTACGCTTCCCT 288
|| || |||| ||||||| || || ||||| ||||||||||| |||||| |||| |||
Sbjct 172 CAGACTCGAATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCT 231
Query 289 AATGAAGCTAACCCTCGCTGGTTCACTCTTTACCGGAAACCTAATCAAACCCTAACTaag 348
|||| |||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 232 GGTGAACCTAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCT---T-AC 287
Query 349 aagaagaagaagaagaagaaagaGGATTCAAGTGGCAATCTTTTGGCTCCAATTTCAATT 408
| | || |||||||| ||| | | | || | ||||||||||||||| ||
Sbjct 288 CACTA-AA-AAGAAGAA-AAATA-G--T---GT-TC-ATCTTTTGGCTCCAA--TC---- 330
Query 409 CTCAACTCTCCTCCTTTGGAATGGTCAAGTCTCATCGCTGTTGGTTCTTATCTTTACGCC 468
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 331 CTCAACTCTCCTCCTGTGGAATTCCCAAGTCTCATCGCTGTTGGTTCTTATCTTTATGCC 390
Query 469 ATTACCGCAGCCAT 482
||| ||||||||
Sbjct 391 TTTAGAGCAGCCAT 404
Score = 126 bits (68), Expect = 4e-28
Identities = 99/114 (87%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 622 GATTCTTTGAACTGTGTTGAAGTGTACAACACAGAGACTCAAGCTTGGAATCCTGTGCCG 681
|||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 421 GATTCTCTGAACTGTGTTGAAGTGTACAACACAGACACTCAAACTTGGATTCCTGTGCCG 480
Query 682 CCCAA-AAGACGGATATTCGAATTAGAAAATTTGGAAGGAACGATTTACATGAA 734
||||| || |||||||||| || | || || || |||||| | ||||||||||
Sbjct 481 CCCAACAA-ACGGATATTCAAACTCCAACATATGAAAGGAATGCTTTACATGAA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5