BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949358
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28330.1 | Symbols: | F-box family protein-related | chr3:1... 211 1e-53
> AT3G28330.1 | Symbols: | F-box family protein-related | chr3:10586566-10587712
REVERSE LENGTH=1050
Length=1050
Score = 211 bits (114), Expect = 1e-53
Identities = 432/579 (75%), Gaps = 48/579 (8%)
Strand=Plus/Plus
Query 561 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT 618
|||||||||||||||||||||||||||||||||| || || | | ||| |||| || ||
Sbjct 400 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA 458
Query 619 TGTACTATGGATATTTTTCCCGTTCAATTAGCTTGAATGGAAATCTTTACTGGCTCAACC 678
| || | | | | ||| | | | ||||||||||| |||| ||||||||||||| ||
Sbjct 459 TATA-TCTCAAGAGTTTAACAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCCC 517
Query 679 GCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CGG 735
| | || || ||||| || || |||||| || |||||||||| || | | |
Sbjct 518 ACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCCG 575
Query 736 ATTCTGATCGATTTCGTGTTACACG-TTTCCCTGATTCAGGA-AAACATCCCAAATTCAA 793
| ||||||||| || | ||| | ||||| ||||| || | ||| ||| |||||||
Sbjct 576 CT-CTGATCGATGCCGCGCTACGCCATTTCC-TGATTTAG-ATAAAGTTCCGAAATTCAG 632
Query 794 AAGAGCATGCACTATTTTTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACCAA 853
|||| | ||||| | || |||||||| ||||||||||||||| || | |||||| ||||
Sbjct 633 AAGAACTTGCACAACTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CCAA 691
Query 854 A-GATGATGG-AAGTCTAGAGGATAAGTTAAT-TATATGGAAGCTAAAGAGCGGGGAATG 910
| | |||||| || | ||||||| |||||| | | |||||| |||| ||||| || ||||
Sbjct 692 AAGTTGATGGTAATT-TAGAGGACAAGTTA-TGTGTATGGAGGCTAGAGAGCTGGCAATG 749
Query 911 GC-AGCTAGTAT-CTGAAATCTCTGCGGATTTTGTTAATCCCGGTTTCGATCATATTCCA 968
|| | ||||||| | ||||| ||| ||||| | |||| | ||||||||| |||||||
Sbjct 750 GCGA-CTAGTATTC-GAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCC- 806
Query 969 GT-GACAATAAACTCTGTTGATGCAAAAACAGTCTAT-TTCTGGAACAGGAAGCATCAAA 1026
|| | || | || || ||||||| ||||||||||| || |||| | ||| ||
Sbjct 807 GTTGGGAACAGACCCTTTTGATGCTAAAACAGTCTACCTT-TGGA---GTC-GCA--AAT 859
Query 1027 GTTTGGTATCTGCTAACTTATGCAATGG-GA-AGTTTGTGCTCCATA-GTGAAT-TGGAA 1082
| ||| ||||| ||||||| |||||| || | || |||||||| | | || | |||||
Sbjct 860 GCTTGTTATCTATTAACTTACACAATGGAGACA-TT-GTGCTCCACAAG-GA-TGTGGAA 915
Query 1083 CATAGC-G-G----TCGCAGTCCGAATTCCGTTGAATGC 1115
|||||| | | ||||| || |||||||||||| |||
Sbjct 916 CATAGCAGCGCGGGTCGCATTCTGAATTCCGTTGATTGC 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5