BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949358 Length=1189 Score E Sequences producing significant alignments: (Bits) Value AT3G28330.1 | Symbols: | F-box family protein-related | chr3:1... 211 1e-53 > AT3G28330.1 | Symbols: | F-box family protein-related | chr3:10586566-10587712 REVERSE LENGTH=1050 Length=1050 Score = 211 bits (114), Expect = 1e-53 Identities = 432/579 (75%), Gaps = 48/579 (8%) Strand=Plus/Plus Query 561 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT 618 |||||||||||||||||||||||||||||||||| || || | | ||| |||| || || Sbjct 400 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA 458 Query 619 TGTACTATGGATATTTTTCCCGTTCAATTAGCTTGAATGGAAATCTTTACTGGCTCAACC 678 | || | | | | ||| | | | ||||||||||| |||| ||||||||||||| || Sbjct 459 TATA-TCTCAAGAGTTTAACAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCCC 517 Query 679 GCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CGG 735 | | || || ||||| || || |||||| || |||||||||| || | | | Sbjct 518 ACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCCG 575 Query 736 ATTCTGATCGATTTCGTGTTACACG-TTTCCCTGATTCAGGA-AAACATCCCAAATTCAA 793 | ||||||||| || | ||| | ||||| ||||| || | ||| ||| ||||||| Sbjct 576 CT-CTGATCGATGCCGCGCTACGCCATTTCC-TGATTTAG-ATAAAGTTCCGAAATTCAG 632 Query 794 AAGAGCATGCACTATTTTTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACCAA 853 |||| | ||||| | || |||||||| ||||||||||||||| || | |||||| |||| Sbjct 633 AAGAACTTGCACAACTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CCAA 691 Query 854 A-GATGATGG-AAGTCTAGAGGATAAGTTAAT-TATATGGAAGCTAAAGAGCGGGGAATG 910 | | |||||| || | ||||||| |||||| | | |||||| |||| ||||| || |||| Sbjct 692 AAGTTGATGGTAATT-TAGAGGACAAGTTA-TGTGTATGGAGGCTAGAGAGCTGGCAATG 749 Query 911 GC-AGCTAGTAT-CTGAAATCTCTGCGGATTTTGTTAATCCCGGTTTCGATCATATTCCA 968 || | ||||||| | ||||| ||| ||||| | |||| | ||||||||| ||||||| Sbjct 750 GCGA-CTAGTATTC-GAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCC- 806 Query 969 GT-GACAATAAACTCTGTTGATGCAAAAACAGTCTAT-TTCTGGAACAGGAAGCATCAAA 1026 || | || | || || ||||||| ||||||||||| || |||| | ||| || Sbjct 807 GTTGGGAACAGACCCTTTTGATGCTAAAACAGTCTACCTT-TGGA---GTC-GCA--AAT 859 Query 1027 GTTTGGTATCTGCTAACTTATGCAATGG-GA-AGTTTGTGCTCCATA-GTGAAT-TGGAA 1082 | ||| ||||| ||||||| |||||| || | || |||||||| | | || | ||||| Sbjct 860 GCTTGTTATCTATTAACTTACACAATGGAGACA-TT-GTGCTCCACAAG-GA-TGTGGAA 915 Query 1083 CATAGC-G-G----TCGCAGTCCGAATTCCGTTGAATGC 1115 |||||| | | ||||| || |||||||||||| ||| Sbjct 916 CATAGCAGCGCGGGTCGCATTCTGAATTCCGTTGATTGC 954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58383233835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5