BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949359

Length=1208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28330.1 | Symbols:  | F-box family protein-related | chr3:1...   209    4e-53


> AT3G28330.1 | Symbols:  | F-box family protein-related | chr3:10586566-10587712 
REVERSE LENGTH=1050
Length=1050

 Score =  209 bits (113),  Expect = 4e-53
 Identities = 348/458 (76%), Gaps = 30/458 (7%)
 Strand=Plus/Plus

Query  562   ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT  619
             |||||||||||||||||||||||||||||||||| || || | | ||| |||| || || 
Sbjct  400   ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA  458

Query  620   TGTACTATCAATATTTTTATCGTTCA-ATTAGCTTGAATGGAAATCTTTACTGGCTCAAC  678
             | || | |||| | ||| | |  ||  ||||||||||| |||| |||||||||||||  |
Sbjct  459   TATA-TCTCAAGAGTTTAA-CAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCC  516

Query  679   CGCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CG  735
             | |  |   ||  || ||||| || || |||||| || ||||||||||    ||  | | 
Sbjct  517   CACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCC  574

Query  736   GATTCGGATCGATGTCGAGTTACACT-TTATCCTGATTCAGGA-AAACATCCCAAATTCA  793
             | | | |||||||| || | ||| |  || |||||||| || | |||  ||| |||||||
Sbjct  575   GCT-CTGATCGATGCCGCGCTACGCCATT-TCCTGATTTAG-ATAAAGTTCCGAAATTCA  631

Query  794   GAAGAGGATGCACTA-TATCTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACC  852
             |||||   ||||| | | |||||||||| |||||||||||||||  || | |||||| ||
Sbjct  632   GAAGAACTTGCACAACT-TCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CC  689

Query  853   AAA-GATGATGG-AAGTCTAGAGGATAAGCTAAGTATATGGAAGCTTA-AGAGCGGGGAA  909
             ||| | |||||| || | ||||||| ||| || || |||||| ||| | ||||| || ||
Sbjct  690   AAAAGTTGATGGTAATT-TAGAGGACAAGTTATGTGTATGGAGGCT-AGAGAGCTGGCAA  747

Query  910   TGGC-AGCTAGTAT-CTGAAATCTCTGTGGATTGTGTTAATCCCAGTTTTGATCATATTC  967
             |||| | ||||||| | ||||| ||| |||||| | ||||  |  |||| ||| ||||||
Sbjct  748   TGGCGA-CTAGTATTC-GAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTC  805

Query  968   CAGT-GACAATAAACTCTGTTGATGCTAAAACAGTCTA  1004
             | || |  || | || || |||||||||||||||||||
Sbjct  806   C-GTTGGGAACAGACCCTTTTGATGCTAAAACAGTCTA  842



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59337044190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5