BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949363

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49015.1 | Symbols:  | Expressed protein | chr5:19869139-198...   392    9e-109


> AT5G49015.1 | Symbols:  | Expressed protein | chr5:19869139-19870329 
FORWARD LENGTH=599
Length=599

 Score =  392 bits (212),  Expect = 9e-109
 Identities = 259/282 (92%), Gaps = 1/282 (0%)
 Strand=Plus/Plus

Query  1    TGTTATCAAC-TTTTAGAAGAGATGCATTTGTGGCCATCATTGAAACTTCGAAACTCTTT  59
            |||||| ||| ||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  202  TGTTATAAACATTTGAGCAGAGATGCATTTGTGGCCATCGTTGAAACTTCGAAACTCTTT  261

Query  60   CAAGAGCACTAGCCAGAAGAGATTTCAAAGGATGAACAGTGGGAATCGAAGTCAAAGCAA  119
            ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct  262  CAAGAGCACTAGCCAGAAGAGATATCAAAGGATGAACAGTGGGAAACAAAGTCAAAGCAA  321

Query  120  CCAGCAAAAACTCCTCAACGGCGACAAAGAATCTGGCAGCCCCGAGATGTCATCTGGTGG  179
             ||||| ||||||||  ||||||||||||||||||| ||||||||||| || ||||||||
Sbjct  322  TCAGCAGAAACTCCTTGACGGCGACAAAGAATCTGGAAGCCCCGAGATTTCGTCTGGTGG  381

Query  180  TGGTTTTGCTGTTGTTTGCAGAGATGCTGCCATGGTTCTCTCTTGTTGCTACTGCTGTTT  239
            ||| |||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct  382  TGGGTTTGCTGTTGTTTGTAGAGATGTTGCCATGGTTCTTTCTTGCTGCTACTGCTGTTT  441

Query  240  CTGCTGTGGAGCTTGCATTGATGACGAAGAGATTTGATACAA  281
            |||||||||||||||||||||||| || |||||||||| |||
Sbjct  442  CTGCTGTGGAGCTTGCATTGATGAGGAGGAGATTTGATGCAA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5