BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949367

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49040.1 | Symbols:  | Disease resistance-responsive (dirige...   257    3e-68
  AT3G13650.1 | Symbols:  | Disease resistance-responsive (dirige...   187    4e-47


> AT5G49040.1 | Symbols:  | Disease resistance-responsive (dirigent-like 
protein) family protein | chr5:19882676-19883251 REVERSE 
LENGTH=576
Length=576

 Score =  257 bits (139),  Expect = 3e-68
 Identities = 183/205 (89%), Gaps = 0/205 (0%)
 Strand=Plus/Plus

Query  71   TTTTAAGACTGGTAAGTATAATGGGAGTACCATCATGATTCTTGGTCGTAATACGGTGTT  130
            |||||||||||| ||||| || ||||||||||| | |||||||||||| || |||||| |
Sbjct  372  TTTTAAGACTGGGAAGTACAACGGGAGTACCATAACGATTCTTGGTCGGAACACGGTGAT  431

Query  131  ATCCAAGGTTAGGGAGATGCCAGTGGTTGGAGGCAGTGGAATGTTCCGGTTTGCTAGAGG  190
             |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  432  GTCCAAGGTTAGGGAAATGCCGGTGGTTGGAGGCAGTGGAATGTTCCGGTTTGCTAGAGG  491

Query  191  TTATGTCGAGGCTCAGACCAAATGGTTTGATATTAAGACTGGTGACGCTACTGTTGAGTA  250
            ||||||||| || | |||||| | ||| ||||| ||||||||||| ||||||||||||| 
Sbjct  492  TTATGTCGAAGCACGGACCAAGTTGTTCGATATGAAGACTGGTGATGCTACTGTTGAGTC  551

Query  251  TAAGTGTTATATCTTGCATTATTGA  275
            ||| ||||||||||||||||| |||
Sbjct  552  TAACTGTTATATCTTGCATTACTGA  576


> AT3G13650.1 | Symbols:  | Disease resistance-responsive (dirigent-like 
protein) family protein | chr3:4462892-4463872 FORWARD 
LENGTH=981
Length=981

 Score =  187 bits (101),  Expect = 4e-47
 Identities = 172/206 (83%), Gaps = 6/206 (3%)
 Strand=Plus/Plus

Query  75   AAGACTGGTAAGTATAATGGGAGTACCATCATGATTCTTGGTCGTAATACGGTGTT-ATC  133
            ||||| || |||||||| || ||| | |||  ||||||||| || ||  | ||||| | |
Sbjct  525  AAGACAGGGAAGTATAACGGAAGTTCGATCGCGATTCTTGGCCGGAACGCTGTGTTGA-C  583

Query  134  CAAGGTTAGGGAGATGCCAGTGGTTGGAGGCAGTGGAATGTTCCGGTTTGCTAGAGGTTA  193
            |||||||||||||||||| ||| ||||||| |||||| | ||||||||||||||||||||
Sbjct  584  CAAGGTTAGGGAGATGCCGGTGATTGGAGGAAGTGGACTCTTCCGGTTTGCTAGAGGTTA  643

Query  194  TGTCGAGGCTCAGACCAAATGGTTTGAT-ATTAAGACTGGTGACGCTACTGTTGAGTATA  252
            ||||||||||| |||||  ||||||||| |  ||| | || || |||||||||||||| |
Sbjct  644  TGTCGAGGCTCGGACCATGTGGTTTGATCAA-AAGTCAGGAGATGCTACTGTTGAGTACA  702

Query  253  AG-TGTTATATCTTGCATTATTGATG  277
             | |||||| ||||||||||||||||
Sbjct  703  -GCTGTTATGTCTTGCATTATTGATG  727



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5