BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949368
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49050.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 577 4e-164
> AT5G49050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to stress; LOCATED IN: cellular_component
unknown; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016),
Rossmann-like alpha/beta/alpha sandwich fold
(InterPro:IPR014729); BEST Arabidopsis thaliana protein match
is: Adenine nucleotide alpha hydrolases-like superfamily protein
(TAIR:AT2G47710.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink). | chr5:19883929-19884381 FORWARD LENGTH=453
Length=453
Score = 577 bits (312), Expect = 4e-164
Identities = 355/376 (94%), Gaps = 1/376 (0%)
Strand=Plus/Plus
Query 1 AAAGCTAAAGAGAATCAAAAATGGCTAGTGGAAGTGAGCGTGTGGTGGTCGTAGGAGTAG 60
||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 78 AAAGCTAAAGAAAATC-AAAATGGCTAGTGGAAGTGAGCGTGTGGTGGTTGTCGGAGTAG 136
Query 61 ATGATTCAGCCCATAGCTACCATGCACTCGAGACGGCTCTTGATCTCTTTTTCATACCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 ATGATTCAGCCCATAGCTACCATGCACTCGAGACGGCTCTTGATCTCTTTTTCATACCTT 196
Query 121 TCAAGGCCAACCCACAATTCAAACTTGTCGTTGTTCACGGACGACCAACAGCGACCTCCT 180
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 197 TCAAGGCCAACCCACGATTCAAACTTGTCGTCCTTCACGCTCGACCAACAGCGACCTTCT 256
Query 181 TCCTCGGTGTTGCTGGTCCTGGAACGGTGGATATTATACCAATGGTGGAACAAGATTTAA 240
|||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||
Sbjct 257 TCCTCGGTGTTGCTGGCCCGGGAACGGTCGATATTATACCAATGGTGGAAGAAGATTTAA 316
Query 241 ACAAGACCGCAGAATTGGTTAAGAAGAAGTGCTCCGAAGTGTGCTCGGCTAAGTCCGTTG 300
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 317 ACAAGACCGCGGACTTGGTTAAGAAGAAGTGCGCCGAAGTGTGCTCGGCTAAGTCCGTTG 376
Query 301 AGATCTCGTCTTTGGAGGTGATTGAAGGAGATCCAAGGAATATTATGTTGGAAGCCGTGG 360
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct 377 AGATCTCGTCTTTGGAGGTGATTGAAGGAGATCCGAGAAACATAATGTTGGAAGCCGTGG 436
Query 361 AGAGACATCATGCATG 376
||||||||||||||||
Sbjct 437 AGAGACATCATGCATG 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26222224734
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5