BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949369

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49630.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-depen...   204    3e-52
  AT3G49620.1 | Symbols: DIN11 | 2-oxoglutarate (2OG) and Fe(II)-...   158    2e-38


> AT3G49630.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-dependent 
oxygenase superfamily protein | chr3:18397759-18400255 
FORWARD LENGTH=999
Length=999

 Score =  204 bits (110),  Expect = 3e-52
 Identities = 135/147 (92%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  23   ATGGCGACAAACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCTTTAGTGGTCAAA  82
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGACAAACTTCAAATCCCTATTACCAGTTATCGACATCAGTCCTTTAGTGGTCAAA  60

Query  83   TGTGATGATTCGAACATGGCCGAGGATGCCGACGTGGCAAAGGTTGTGAGGAAA-CTGGA  141
            ||||||||| | |||||||| |||||||||| ||||||  |||||||| ||||| |||||
Sbjct  61   TGTGATGATGCCAACATGGCGGAGGATGCCGGCGTGGCGGAGGTTGTG-GGAAAGCTGGA  119

Query  142  CAAGGCCTGTCGGGATGCCGGATTCTT  168
            || |||||||||||| || ||||||||
Sbjct  120  CAGGGCCTGTCGGGACGCAGGATTCTT  146


> AT3G49620.1 | Symbols: DIN11 | 2-oxoglutarate (2OG) and Fe(II)-dependent 
oxygenase superfamily protein | chr3:18393747-18396816 
FORWARD LENGTH=1304
Length=1304

 Score =  158 bits (85),  Expect = 2e-38
 Identities = 145/172 (84%), Gaps = 11/172 (6%)
 Strand=Plus/Plus

Query  1    TCATTTGTCTTAAGTATCTGAAATGGCGACAAACTTCAAATCCCTACTACCAGTTATCGA  60
            ||||||  ||||| ||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct  133  TCATTT-CCTTAA-TAT-TGAAATGGTGACAGACTTCAAATCCCTACTACCAGTTATCGA  189

Query  61   CATCAGTCCTTTAGTGGTCAAATGTGATGATT-CGAACATGGCCGAGGATGCCGACGT-G  118
            ||||||||||||| ||| |||||||||||||| ||| |||||| |||||||| |  || |
Sbjct  190  CATCAGTCCTTTACTGGCCAAATGTGATGATTTCGA-CATGGCTGAGGATGCGGGGGTTG  248

Query  119  -GCAAAGGTTGTGAGGAAA-CTGGACAAGGCCTGTCGGGATGCCGGATTCTT  168
             | || | | ||  ||||| ||||||| ||| |||||||| | |||||||||
Sbjct  249  TGGAA-G-TAGTC-GGAAAACTGGACAGGGCATGTCGGGACGTCGGATTCTT  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9500604561


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5