BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949372
Length=2320
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49600.1 | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specif... 2870 0.0
AT3G49640.1 | Symbols: | Aldolase-type TIM barrel family prote... 614 1e-174
> AT3G49600.1 | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specific
protease 26 | chr3:18380549-18387128 REVERSE LENGTH=3719
Length=3719
Score = 2870 bits (1554), Expect = 0.0
Identities = 1766/1861 (95%), Gaps = 43/1861 (2%)
Strand=Plus/Plus
Query 449 GCTGCGTACACTACCTCCTGTTATCACTTTTCAGCTCAAACGATGCATTTTCCTTCCTAA 508
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCTGCGCACACTACCTCCGGTTATCACTTTTCAGCTCAAACGATGCATTTTCCTTCCTAA 1130
Query 509 GACAACGGCTAAGAAGAAAATCACCTCCTCATTTTCCTTTCCTCAAGTGCTAGATATGGG 568
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1131 GACAACGGCGAAGAAGAAAATCACCTCATCATTTTCCTTTCCTCAAGTGCTGGATATGGG 1190
Query 569 ATCGAGATTGGCAGAATCTTCTCAAAACAAGTTGACATACGATCTCTCTGCTGTGTTAAT 628
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1191 ATCGAGATTGGCAGAGTCTTCTCAAAACAAATTGACATACGATCTCTCTGCTGTGTTAAT 1250
Query 629 CCACAAAGGAAGCGCTGTTAACAGCGGACATTATGTTGCTCACATAAAAGATGAAAAGAC 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CCACAAAGGAAGCGCTGTTAACAGCGGACATTATGTTGCTCACATAAAAGATGAAAAGAC 1310
Query 689 TGGCTTGTGGTGGGAATTTGATGATGAACATGTGTCAGAACTGGGTAAATGTCCAT-TCA 747
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 1311 TGGCTTGTGGTGGGAATTTGATGATGAACATGTGTCAGAACTGGGTAAACGTCCATGT-A 1369
Query 748 ATGAAGCTTCTTCTTCAACTCCACAATCTGAGAGTAATGGTACAGCTAGTAGTGAGAATA 807
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1370 ATGAAGCTTCTTCTTCAACTCCACAATCTGAGAGTAATGGTACGGCTAGTAGTGGGAATA 1429
Query 808 TCACAGATGTCATTCAATCAGGCTCTTCAGACTGTAGGTCTGCTATTAAGTCAGAGGTTT 867
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TCACAGATGGCATTCAATCAGGCTCTTCAGACTGTAGGTCTGCTATTAAGTCAGAGGTTT 1489
Query 868 TCTCATCCAGTGATGCTTATATGCTGATGTATAGTCTTAGATGCGATAAACAGGAAAATC 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TCTCATCCAGTGATGCTTATATGCTGATGTATAGTCTTAGATGCGATAAACAGGAAAATC 1549
Query 928 AGGAAGGACAGAAAGAAAATCCTATTGACA-TATCTAAAGGAAAAGTTGATAGTCTTCAA 986
|||||||||| ||||||||||||||||||| || ||||||| | || || || ||
Sbjct 1550 AGGAAGGACAAAAAGAAAATCCTATTGACATTA-CTAAAGG---A---GA-AG--TTAAA 1599
Query 987 CAGCTTAAAGGTGGTTATCTTCCGTTACATCTTTATGAATGGATCAATAATATGAATGCA 1046
||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 1600 CAGCTTAAAGGTGGTTATCTTCCAAAACATCTTTCTGAATGGATCAATAACATGAATGCA 1659
Query 1047 GTATTCCTTGAGAGTTGCAAGCAATATGATTTAAGAAAGGAAAAAGAATTGAGTGCTTTG 1106
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1660 GTATTCCTTGAGAGTTGCAAGCAATATAATTTAAGAAAGGAAAAAGAATTGAATGCTTTG 1719
Query 1107 ACTGAAAGGAGGCAAGAAGTACGGACTATCCTTTCAGAAGCTGCTGTTCAGTCACTTGAA 1166
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1720 ACTGAAAGGAGGCAAGAAGTACGGACAATCCTTTCAGAAGCTGCTGTTCAGTCACTTGAA 1779
Query 1167 GAACAATATTTTTGGATCTCCACAGATTGGCTTCGTCTATGGGCTGATACCACTTTGCCT 1226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1780 GAACAATATTTTTGGATCTCCACAGATTGGCTTCGTCTATGGGCTGATACCACTTTACCT 1839
Query 1227 CCCGCTTTGGACAACACCCCTTTACTGTGTTCCCATGGGAAAGTTCTTGCCTCAAAAGTA 1286
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1840 CCCGCTTTGGACAACACCCCTTTACTGTGTTCCCATGGGAAAGTTCATGCCTCAAAAGTG 1899
Query 1287 AATTGCATGAAGCTGATATCTGAACTTGCATGGACCAAGTTAGAATC--A----AA---- 1336
||||||||||||| |||||||||||||||||||| |||||||||||| | ||
Sbjct 1900 AATTGCATGAAGCGGATATCTGAACTTGCATGGATCAAGTTAGAATCAAAGTTCAATGGC 1959
Query 1337 -G------G--A---AAAGCGGACTACTGCAGGGACTGCCTTATGGGATGGTGCTCGCAT 1384
| | | |||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1960 GGACCAAAGTTAGGGAAAGGGGACTACTGCAGGGACTGCCTTAT-GGATGGTGCTCGCAT 2018
Query 1385 GGTTGTCTCTTCTGACAGTTATAGGGATCGAAGAACATTCATGAAAAGCGTAGCAAATGA 1444
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2019 GGTTGTGTCTTCTGACAGTTATAGGGATCGAAGAACATTCATGAAAAGCATAGCAAATGA 2078
Query 1445 TGTTCTTTCGGGAAAGTGTGAGGACGGAATGTATTATATCTCTAGAGCATGGTTGCAGCA 1504
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2079 TGTTCTTTCGGGAAAGTGCGAGGACGGAATGTATTATATCTCTAGAGCATGGTTACAGCA 2138
Query 1505 ATGGATAAAAAGGAAAAATCTTGATGCTCCTACTGAAGCAGATGCGGGGCCCACAAATGC 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 ATGGATAAAAAGGAAAAATCTTGATGCTCCTACTGAAGCAGATGCGGGGCCCACAAATGC 2198
Query 1565 TATTACGTGCAATCATGGAGAGCTGATGCCAGAGCAAGCACCAGGGGCCAAAAGAATTGT 1624
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2199 TATTACGTGCAATCATGGTGAGCTGATGCCAGAGCAAGCACCAGGGGCCAAAAGAGTTGT 2258
Query 1625 AGTTCCAGAGAATTTCTGGTCATTCCTTGTTGAAGATGCTCTAAAAGTGATGCCAGAAGA 1684
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2259 AGTTCCAGAGAATTTCTGGTCATTCCTTTTTGAAGATGCTCTAAAAGTGATGTCAGAAGA 2318
Query 1685 TGCTTCGGATTGTACTTGTTTCCCTGTGGACTCCAGCCAATGTTGTCATTGCACAGAGGA 1744
| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2319 TACTTTGGATTGTACTTGTTTTCCTGTGGACTCCAGCCAATGTTGTCATTGCACAGAGGT 2378
Query 1745 ACTTTCTGAGGTTGCATGCCTT-GAGGATTCACTAAGAACATTGAAGGTCAAGCAGCGCC 1803
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2379 ACTTTCTGAGGTTGCATG-CTTCGAGGATTCACTAAGAACATTGAAGGTCAAGCAGCGCC 2437
Query 1804 AAAATCACGAGAAGTTAGCCACGGGAAAGAATATACCATTTACGCCACAAAGCCGATATT 1863
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 2438 AAAATCACGAGAAGTTAGCCACGGGAAAGGGTATACCATTAACGCCACAAAGCCGATATT 2497
Query 1864 TCTTGTTGCCTTCTCCGTGGCTAGTGCAATGGAGAATCTATATTAACATGACTGGAAAAA 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2498 TCTTGTTGCCTTCTCCGTGGCTAGTGCAATGGAGAATCTATATTAACATGACTGGAAAAA 2557
Query 1924 ATAGTTCTTCAGCACCAGAGCCTGAACGTCTTGATGGAGTCATTAATACTCTCAAATGCA 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 ATAGTTCTTCAGCACCAGAGCCTGAACGTCTTGATGGAGTCATTAATACTCTCAAATGCA 2617
Query 1984 AAAAGCACACACGACTCCTTGAAAGGCTCCCTGAACTTGTCTGCAGACGTGGCTCGTATT 2043
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618 AAAAGCATACACGACTCCTTGAAAGGCTCCCTGAACTTGTCTGCAGACGTGGCTCGTATT 2677
Query 2044 TTCAGAAAAATCCATCTACAGACAAGCTGACAATCATCCCTGAGATTGATTGGAAATATT 2103
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 2678 TTCAGAAAAATCCATCTACAGACAAGCTAACAATCATCCCTGAGCTTGATTGGAAATATT 2737
Query 2104 TCTGTGAGGAGTGGGGAGGACTCATGGAGAATGGAATATCTGCTCTTATTGAGGTTGGTA 2163
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2738 TCTGTGACGAGTGGGGAGGGCTCATGGAGAATGGAATATCTGCTTTTATTGAGGTTGG-- 2795
Query 2164 ACAATACAGACCAAAGTTCATCCCCAGACATCATTGACCTTGAGAAGCATTCTTCTCCGG 2223
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2796 -CAATACAGACCAAAGTTCATCCCCAGACGTCATTGACCTTGAGAAGGATTCTTCTCCGG 2854
Query 2224 ATGATAATATGGAGGTTGATGCTCAACAGCTTATTCTCAGGGCATCTCCAGAGGTATTTG 2283
||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2855 ATGATAATATGGACGTTGATGCTCAACAGCTTATTCTCAGGGCATCCCCAGAG--ATTTG 2912
Query 2284 C 2284
|
Sbjct 2913 C 2913
> AT3G49640.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:18400306-18402869 REVERSE LENGTH=1224
Length=1224
Score = 614 bits (332), Expect = 1e-174
Identities = 391/420 (93%), Gaps = 2/420 (0%)
Strand=Plus/Plus
Query 1 CGAAGAAGAAGACGACGAAGATGGATTACCAGAACAAGCTTGTTCTTGCTCCCATGGTTC 60
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 41 CGAAGAAGAAGAAGACGAAGATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTC 100
Query 61 GTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCCGAATACGGCGCCGATATCACATACG 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 101 GTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACG 160
Query 121 GTGAAGAGATTATCGATCATAAGCTTGTTAAATGCGAACGTCGAATTAACGTTGCTTATG 180
||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||| ||
Sbjct 161 GTGAAGAGATTATTGATCATAAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTG 220
Query 181 GGACAACTGAGTTTGTGGAGAAAGGAACAGACAATGTCGTCTTTAGCACATGTAAAGAAG 240
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||
Sbjct 221 GGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAG 280
Query 241 AGAGAAA-TAGAGTTGTTTTTCAAATGGGAACTTCTGATGCTGTTAGGGCTCTAAAAGCT 299
| | ||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 281 AAA-AAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCT 339
Query 300 GCTGAGATTGTGTGCAACGACGTTGCAACTGTTGATATTAATATGGGTTGCCCCAAGGCG 359
||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 340 TCTGAGATTGTGTGTAATGACGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCA 399
Query 360 TTCTCTATTCAAGGAGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAACTTATTCATGAT 419
|||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 400 TTCTCTATCCAAGGTGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGAT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115160050230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5