BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949379

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44530.1 | Symbols: HIRA | homolog of histone chaperone HIRA...   207    8e-53


> AT3G44530.1 | Symbols: HIRA | homolog of histone chaperone HIRA 
| chr3:16115682-16121484 FORWARD LENGTH=3758
Length=3758

 Score =  207 bits (112),  Expect = 8e-53
 Identities = 123/128 (96%), Gaps = 1/128 (1%)
 Strand=Plus/Plus

Query  1    TCGAATTGGGCAGAAGAGAGATGATTGCGGAGAAACCCTCTTGGGTTAAACATGAAGGGT  60
            |||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  326  TCGAATTGAG-AGAAGAGAGATGATTGCGGAGAAGCCCTTTTGGGTTAAACATGAAGGGT  384

Query  61   TACAGATATTCTCCATTGATGTTCAACCTAATGGAGAAAGGTTTGCTACAGGCGGTGGTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  385  TACAGATATTCTCCATTGATGTTCAACCTAATGGAGAAAGGTTTGCTACTGGCGGTGGTG  444

Query  121  ACCACAAG  128
            ||||||||
Sbjct  445  ACCACAAG  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33305239461


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5