BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949380
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28030.2 | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5... 1533 0.0
AT5G28020.1 | Symbols: CYSD2, ATCYSD2 | cysteine synthase D2 | ... 1118 0.0
> AT5G28030.2 | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5:10030406-10032451
REVERSE LENGTH=1107
Length=1107
Score = 1533 bits (830), Expect = 0.0
Identities = 954/1014 (94%), Gaps = 7/1014 (1%)
Strand=Plus/Plus
Query 7 CAAAGACAGACCAACATGGAAGACAGAATTTCTTTGATCAAGAACGATGTCACTGAATTG 66
|||||||| ||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 34 CAAAGACAAACCAACATGGAAGACCG--CGTC-TTGATCAAGAACGATGTCACTGAATTG 90
Query 67 ATTGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCATATT 126
|| |||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||
Sbjct 91 ATAGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATT 150
Query 127 GCTGCCAAGCTTGAGATGATGGAGCCTTGTTCTAGCATCAAAGACAGAATCGCGTATAGT 186
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 151 GCTGCCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGT 210
Query 187 ATGATCAAAGATGCAGAAGAAAAAGGATTGATCACCCCTGGAAAGAGTACATTGATTGAG 246
|||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 211 ATGATCAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAG 270
Query 247 GCCACGGGTGGTAATACCGGAATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAA 306
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 271 GCAACGGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAA 330
Query 307 GTGATTCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATAATTCTGAGAGCATTA 366
||||| |||||||||||| |||| ||||| ||||| |||||||| ||||| |||||||||
Sbjct 331 GTGATCCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTCTAAGAGCATTA 390
Query 367 GGTGCAGAGGTTTATCTCACAGATATGAGCATAGGCATTAAAGGACAATTGGAGAAAGCT 426
|||||||||||| ||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 391 GGTGCAGAGGTTCATCTCACTGACATTAGCATAGGCATTAAAGGACAGTTGGAGAAAGCT 450
Query 427 AAAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTTATAAATCCTGAA 486
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 451 AAAGAGATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTTATTAATCCTGAA 510
Query 487 AACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCTGCAGGGAAA 546
|| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 511 AATCCAGAGATTCATTATAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAA 570
Query 547 GTAGATATCTTGGTGGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTC 606
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GTAGATATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTT 630
Query 607 CTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTA 666
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 631 CTTAAAGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCGGTA 690
Query 667 CTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGAAATTCCA 726
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 691 CTCAGCGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATTCCA 750
Query 727 ACCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATT 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GCCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATT 810
Query 787 GAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCC 846
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 811 GAAACAACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCC 870
Query 847 TCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGTG 906
||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 871 TCAGCTGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCATTGTG 930
Query 907 GTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGA 966
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GTTATTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGA 990
Query 967 TATGAAGCTGAGAATTTGCCAGTTGAAT-A--A-TAGTAACGTAGGATACAATA 1016
|||||||||||||||||||||||||||| | | |||||||||||||| |||||
Sbjct 991 TATGAAGCTGAGAATTTGCCAGTTGAATGAGTAGTAGTAACGTAGGATTCAATA 1044
> AT5G28020.1 | Symbols: CYSD2, ATCYSD2 | cysteine synthase D2
| chr5:10026183-10028531 REVERSE LENGTH=1549
Length=1549
Score = 1118 bits (605), Expect = 0.0
Identities = 876/1005 (87%), Gaps = 25/1005 (2%)
Strand=Plus/Plus
Query 5 TTCA-AAGACAGACCAACATGGAAGA-CAGAATTTCTTTGATCAAGAACGATGTCACTGA 62
|||| || |||||||||||||||||| | | | | ||||||||||||||| |||||||
Sbjct 348 TTCAGAAAACAGACCAACATGGAAGATC-G--GTGC-TTGATCAAGAACGATATCACTGA 403
Query 63 ATTGATTGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCA 122
|||||||||||||||||||||||||||||| || || |||| |||| ||||||||| |
Sbjct 404 ATTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCG 463
Query 123 TATTGCTGCCAAGCTTGAGATGATGGAGCCTTGTTCTAGCATCAAAGACAGAATCGCGTA 182
||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 464 TATCGCTGCGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTA 523
Query 183 TAGTATGATCAAAGATGCAGAAGAAAAAGGATTGATCAC-CCCTGGAAAGAGTACATTGA 241
|||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||
Sbjct 524 TAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCC-GGAAAGAGTACATTGA 582
Query 242 TTGAGGCCA-CGGGTGGTAATACCGGAATTGGTTTAGCCAGCATCGGG-GCTTCAAGAGG 299
| ||| ||| | | |||||| ||||| ||||||||||| |||| ||| ||| |||||||
Sbjct 583 TAGAG-CCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCAT-GGGAGCTGCAAGAGG 640
Query 300 TTATAAAGTGATTCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATAATTCTGAG 359
||||||||||| ||| |||||||| |||| |||||||||||||| ||||| ||||||||
Sbjct 641 CTATAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAG 700
Query 360 AGCATTAGGTGCAGAGGTTTATCTCACAGAT-ATGAGCATAGGCATTAAAGGACAA-TTG 417
||| ||||||||||| || ||||| | || | | |||||||| |||||||| | |||
Sbjct 701 GGCACTAGGTGCAGAGCTTCATCTCTCGGACCA-GCGCATAGGCCTTAAAGGA-ATGTTG 758
Query 418 GAGAAAGCTAAAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTT-AT 476
|||||| || ||| ||| |||||||||||||||||||||||||| ||||| || ||| |
Sbjct 759 GAGAAAACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGA- 817
Query 477 AAATCCTGAAAACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTC 536
|||||||| ||||||||||||||||||| |||||||||| ||||| || |||||||||||
Sbjct 818 AAATCCTGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTC 877
Query 537 TGCAGGGAAAGTAGATATCTTGGTGGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAAC 596
|| |||||||||||||| ||||| || || || || ||||||||||| | |||||||
Sbjct 878 AGCCGGGAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGT 937
Query 597 AGGGAAGTTCCTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGA 656
|||||||||||| || || ||||||||||||| |||||||||||||||||||| | ||
Sbjct 938 AGGGAAGTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGA 997
Query 657 AAGTGCGGTACTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGG 716
|||| ||||||| |||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 998 AAGTCCGGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGG 1057
Query 717 TGAAATTCCAAC-CAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTG 775
| | ||| | |||||||||||||| ||||||||||||||| ||||||||| | ||||
Sbjct 1058 T-ATCGTCCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTG 1116
Query 776 AGGAAGCTATTGAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATAT 835
| || |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1117 AAGAGGCTATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATAT 1176
Query 836 CCTCTGGAGCCTCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGA 895
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1177 CCTCTGGAGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGA 1236
Query 896 AACTCATTGTGGTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCG 955
||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct 1237 AACTCATTGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCG 1296
Query 956 AGTC-AGTCAGATATGAAGCTGAGAATTTGCC-AGTTGAAT-AAT 997
| || | | ||||||||||| ||||||||||| | |||||| |||
Sbjct 1297 ATTCGATT-AGATATGAAGCAGAGAATTTGCCTA-TTGAATGAAT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5