BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949381

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G05510.1 | Symbols:  | Protein of unknown function (DUF1264)...   191    2e-48
  AT2G31985.1 | Symbols:  | Protein of unknown function (DUF1264)...   113    5e-25


> AT1G05510.1 | Symbols:  | Protein of unknown function (DUF1264) 
| chr1:1629446-1630863 FORWARD LENGTH=980
Length=980

 Score =  191 bits (103),  Expect = 2e-48
 Identities = 105/106 (99%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  34   GTTCCAGGAGAGCCAACGAAGACCGAAACCTCCATGGTTGACACGGCAGCTTCAGCCGTA  93
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  124  GTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTGACACGGCAGCTTCAGCCGTA  183

Query  94   CAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGT  139
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  CAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGT  229


 Score = 63.9 bits (34),  Expect = 5e-10
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  1   GAGAATTAATTGATTGGTGTAATGGAGAAGACAGTTC  37
           |||||||||||||||||||||||||||||| ||||||
Sbjct  61  GAGAATTAATTGATTGGTGTAATGGAGAAGGCAGTTC  97


> AT2G31985.1 | Symbols:  | Protein of unknown function (DUF1264) 
| chr2:13613928-13615692 REVERSE LENGTH=957
Length=957

 Score =  113 bits (61),  Expect = 5e-25
 Identities = 91/106 (86%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  34   GTTCCAGGAGAGCCAACGAAGACCGAAACCTCCATGGTTGACACGGCAGCTTCAGCCGTA  93
            |||||||| ||| |||| ||||||| |||||||||  ||||||| ||||| || || || 
Sbjct  116  GTTCCAGGGGAGACAACAAAGACCGGAACCTCCATAATTGACACTGCAGCCTCCGCTGTT  175

Query  94   CAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGT  139
            ||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct  176  CAAAGTTTTGCACCGGTTAACCAAATCCACCAACATCTCTGCGCGT  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5