BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949382
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-ri... 370 4e-102
> AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-rich
17 | chr4:7079316-7080445 FORWARD LENGTH=612
Length=612
Score = 370 bits (200), Expect = 4e-102
Identities = 239/257 (93%), Gaps = 5/257 (2%)
Strand=Plus/Plus
Query 13 TAGGGGTGATGGTGAAGGAAACACTGGGACAGGCGCCGAAG-ACTTGTTTTGAAGCTCTA 71
||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||
Sbjct 69 TAGGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCG-AGTACTTGTTTTGAAGCTCTA 127
Query 72 AAAGATGCTTCTAAAGGTGCATCAACATGTGACTCGGAATTGTGTGCCTCTCTATGTAAG 131
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 128 AAAGATGCTTCTAAGGGTGCAT---CATGTGACTCGGAATTGTGTGCCTCTCTATGTAAG 184
Query 132 AAGAAATCTGCCGACGGTGTTGGTACTTGCAGAACAAAGACGACACAACCCAGTAAAGGA 191
|||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 185 AAGAAATCCGGCGGCGGTGTTGGTACTTGTAGAACAAAGACGACACAACCCAGTAAAGGA 244
Query 192 CAACCAGAATGCCACTGCAGATTTTGGTGTCGATCAGATGGAAGTCCGTACAAGTAGAAT 251
|||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||
Sbjct 245 CAACCAGAATGCCACTGCAGGTTTTGGTGTAAATCAGATGGAACCCCCTACAAGTAGAAT 304
Query 252 TTTCAGACCATCAATTT 268
|||||||||||||||||
Sbjct 305 TTTCAGACCATCAATTT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12265330756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5