BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949386

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26230.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   351    3e-96


> AT1G26230.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr1:9072256-9075307 REVERSE LENGTH=2003
Length=2003

 Score =  351 bits (190),  Expect = 3e-96
 Identities = 208/217 (96%), Gaps = 0/217 (0%)
 Strand=Plus/Plus

Query  271  GAGAATGTTGGCGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGT  330
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  351  GAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGT  410

Query  331  GATGGTTCCACTACATCTATAATTCTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTG  390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  411  GATGGTTCCACTACATCTATAATTCTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTG  470

Query  391  GTTTCTGCTGGAACAAATCCCATCCAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCT  450
             |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct  471  ATTTCTGCTGGAACAAATCCCATCCAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCT  530

Query  451  CTTGTTTTAGAGCTCAGGTCAATGTCCAGAAAAATTG  487
            |||||||||||||||| ||||||||||||| | ||||
Sbjct  531  CTTGTTTTAGAGCTCAAGTCAATGTCCAGAGAGATTG  567


 Score =  305 bits (165),  Expect = 2e-82
 Identities = 253/291 (87%), Gaps = 24/291 (8%)
 Strand=Plus/Plus

Query  5    TGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CTCTCTCTGCGTTGCCTTTTTCTG  55
            ||||| ||||||||||||||||  | |  |   || ||||||||||||||||| ||||||
Sbjct  19   TGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTTCTG  78

Query  56   ATCGAACTTTCCGTAAAAAG-C--CTTCTTCTTC-GAAT-TT---C----TTCCTTC---  100
            ||||||||||||| |||||| |  ||||||||||   || ||   |    ||| |||   
Sbjct  79   ATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTTCTGA  138

Query  101  GAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAGAAGC  160
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  GAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAGAAGC  198

Query  161  TTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAGGGAC  220
            |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct  199  TTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGAC  258

Query  221  GAAACGTAGTGTTGCAGAACAAGTACGGACCTCCCAAGATTGTCAATGACG  271
            ||||||| |||||||||||||||||||| ||||| | ||||||||||||||
Sbjct  259  GAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACG  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27628780850


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5