BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949389
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1834 0.0
AT3G06868.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 198 9e-50
AT3G06870.1 | Symbols: | proline-rich family protein | chr3:21... 198 9e-50
> AT5G49100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G06868.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:19897370-19899114 REVERSE LENGTH=1745
Length=1745
Score = 1834 bits (993), Expect = 0.0
Identities = 1163/1237 (94%), Gaps = 43/1237 (3%)
Strand=Plus/Plus
Query 1 GTTTTGGTTTTTGGTTAT---CAATGGTGGAAGTGAAAGATCAAGATATGGGTGATGGTA 57
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 202 GTTTTGGTTTTTGGTTATCAACAATGGTGGAAGCAAAAGATCAAGATATGGGTGATGGTA 261
Query 58 TGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTC 321
Query 118 AAGAAAAGCTTGGAAAGCTTGTAActtcatctttcccacttcctaaacacctctcttctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 322 AAGAAAAGCTTGGAAAGCTTGTAACTTCATCTTTCCCACTTCCTAAACACCTCACTTCCT 381
Query 178 cttcaacttcttcttctccttccttcAGATCTGACTCTGTTGGTAGTACAACCACTGCCT 237
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 382 CTTCAACTTCTTCTTCTCCTTCCTTCAGATCTGACTCTGTTGGTAGCACAACCACTGCCT 441
Query 238 CTGCAGC---T-tct---c-tctc--tctctc-C-GTCTCCGGAGCAAC--A-AACAAC- 281
|||| || | ||| | |||| |||||| | |||||||||||||| | ||||||
Sbjct 442 CTGCCGCAAATCTCTCAGCGTCTCTTTCTCTCTCTGTCTCCGGAGCAACAAACAACAACA 501
Query 282 A-A-CAAGCTTCCGTTTTTGCTAGCTAAGAAGAAGAAGAAGATGCTTACTG---CTTCTT 336
| | |||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 502 ACAGCAAGCTTCCGTTTTTGTTAGCTAAGAAGAAGAAGAAGATGCTTACTGCTTCTTCTT 561
Query 337 CTTCTGCAACCACGGCGAATATTGTTTACAAGAGAAGTCAATCTACGAGGACTACGAAGA 396
||||| | |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 562 CTTCTTCGACCACGGCTAATATTGTCTACAAGAGAAGTCAATCTACAAGGACTACGAAGA 621
Query 397 CAACGTACGGAGATTCAGATTTCAGTCCGAGAAAGAGAAATGGGTTTTGGTCGTTTCTTC 456
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||
Sbjct 622 CAACGTACGGAGATTCAGATTTGAGCCCGAGAAAGAGAAATGGGTTTTGGTCCTTTTTTC 681
Query 457 ATCTCTACTCTTCTAAACATCATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCA 516
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ATCTCTACTCTTCGAAACAACATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCA 741
Query 517 TAAGCCAGACTGAGACAAAAACAGAGTTGACAGAGACTACAACAGTTGGATCTTCGTCTT 576
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 742 TAAGCCAGACTGAGACAAAAACAGAGTTGGCAGAGACTACAACAGTGGGATCTTCGTCTT 801
Query 577 CTTCGTCAGCTTCTTCTTCAATGTCAAAGAGA---GTT-GT--TGGTGGGAGTAGTAGTA 630
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 802 CTTCGTCAGCTTCTTCTTCAATGTCAAAGAGAGTTGTTGGTGGTGGTGGGAGTAGTAGTA 861
Query 631 ACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTAACAC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 862 ACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTCACAC 921
Query 691 CAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTG 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 CAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTG 981
Query 751 GTGATTTCTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGT 810
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 982 GTGATTTCTTTGAGAGGATCACAAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGT 1041
Query 811 CACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTTAGTAGTAACCCTAGTAATGGTG 870
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1042 CACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTCAGTAGTAACCCTAGTAATGGTG 1101
Query 871 TGAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgt 930
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TTAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGT 1161
Query 931 cttcttcttcatcttcatcatcatgggtatcatcatcatcagctgaacatcatcatcat- 989
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CTTCTTCTTCATCTTCATCATCATGGGTATCATCATCATCAGCTGAACATCATCATCATC 1221
Query 990 a-a-tcataacatgggtcatGGTGG---AGGAAGGAACAGGAGCTGGGGATGGGCATTTG 1044
| | ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1222 ATAATCATAACATGGGTCATGGTGGTGGAGGAAGGAACAGAAGCTGGGGATGGTCATTTG 1281
Query 1045 CAAGTCCAATGAGAGCTTTTAGTTCTTCTTCTT-CGTTTGGTAAAAGAGGCCGTACAATT 1103
||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||
Sbjct 1282 CAAGTCCAATGAGAGCTTTTACTTCTTCTTCTTAC-TCTGGTAAAAGAGGCCGTACAATT 1340
Query 1104 TCAGATTCTAC-A-A-GCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTG 1160
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TCAGATTCTACTACAAGCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTG 1400
Query 1161 TCTGTCAGAAGCTGAATAAATTAA-AAAGTTTGATCT 1196
||||||||||||||||| ||| || ||| ||||||||
Sbjct 1401 TCTGTCAGAAGCTGAATTAAT-AATAAACTTTGATCT 1436
> AT3G06868.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G49100.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr3:2167730-2169222 FORWARD LENGTH=1493
Length=1493
Score = 198 bits (107), Expect = 9e-50
Identities = 212/262 (81%), Gaps = 10/262 (4%)
Strand=Plus/Plus
Query 698 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 757
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 808 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAGCTTCTCTGGTGATTT 867
Query 758 CTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAG-AGTTGAGTCACAGA 816
|||||||||||| ||||||||||||| |||||| | |||||||| | ||||||||||||
Sbjct 868 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAGGA-TTGAGTCACAGA 926
Query 817 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTTAGTAGT-AACCCTAGTA-ATGGTGTG 872
|||||| | ||| || || ||| ||| || || || | || | ||| ||
Sbjct 927 GAGAAGCCACTAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAGATGCAATG 982
Query 873 AGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgtct 932
|| || ||||| | ||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 983 AGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATCATGACATCATCATCT 1042
Query 933 tcttcttcatcttcatcatcat 954
| | ||||| || ||||||
Sbjct 1043 ACAACATCATCAACAACATCAT 1064
> AT3G06870.1 | Symbols: | proline-rich family protein | chr3:2167847-2168960
REVERSE LENGTH=931
Length=931
Score = 198 bits (107), Expect = 9e-50
Identities = 212/262 (81%), Gaps = 10/262 (4%)
Strand=Plus/Minus
Query 698 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 757
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 424 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAGCTTCTCTGGTGATTT 365
Query 758 CTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAG-AGTTGAGTCACAGA 816
|||||||||||| ||||||||||||| |||||| | |||||||| | ||||||||||||
Sbjct 364 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAGGA-TTGAGTCACAGA 306
Query 817 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTTAGTAGT-AACCCTAGTA-ATGGTGTG 872
|||||| | ||| || || ||| ||| || || || | || | ||| ||
Sbjct 305 GAGAAGCCACTAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAGATGCAATG 250
Query 873 AGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgtct 932
|| || ||||| | ||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 249 AGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATCATGACATCATCATCT 190
Query 933 tcttcttcatcttcatcatcat 954
| | ||||| || ||||||
Sbjct 189 ACAACATCATCAACAACATCAT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5