BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949393
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36880.1 | Symbols: | pseudogene, similar to P0529E05.9, bl... 388 2e-107
AT4G08596.1 | Symbols: | transposable element gene | chr4:5475... 379 1e-104
> AT1G36880.1 | Symbols: | pseudogene, similar to P0529E05.9,
blastp match of 46% identity and 1.9e-119 P-value to GP|18461196|dbj|BAB84393.1||AP003279
P0529E05.9 {Oryza sativa (japonica
cultivar-group)} | chr1:13961890-13963772 REVERSE LENGTH=1883
Length=1883
Score = 388 bits (210), Expect = 2e-107
Identities = 322/376 (86%), Gaps = 8/376 (2%)
Strand=Plus/Plus
Query 120 TCAATAAGTGAAGACGAAGCTTCAGTTAGTGAATTTGAAGAAGAAGATGACATAGCCAAC 179
|||||||||||| || ||||||| | | ||||||||||||||||||||| ||||| |||
Sbjct 4 TCAATAAGTGAAAACAAAGCTTCGGCCAATGAATTTGAAGAAGAAGATGAAATAGCTAAC 63
Query 180 AAAGACGATTATGTTCAAACTGAAGAGGTTGTTGCTTTAGAAGAAAACAAAG-TGAATGA 238
| || ||| ||||| ||||||| |||||| | |||| |||| ||| || | | |||||
Sbjct 64 GACGAGGATGATGTTGTAACTGAACAGGTTGCTACTTTTGAAGCAAATAATGAT-AATGA 122
Query 239 GAAAAAAGAT-GAA-CTATGTATTGGAATGGAGTTTAGTTCTGATGAGGCTGCATATATA 296
||| |||||| || ||| ||||||||| ||||| |||||||||||| ||||||||||
Sbjct 123 GAAGAAAGATAAAATATATATATTGGAATAGAGTTCAGTTCTGATGAGATTGCATATATA 182
Query 297 GCTTATA-AGCAGTATGGAGGCAATCATGGTTTCAACGTAAGGAAACAACGGAGGACGAA 355
|||||| | |||||||||| |||| ||||||||| |||| ||||||||||||| |||
Sbjct 183 ACTTATACA-AAGTATGGAGGAAATCGTGGTTTCAATATAAGAAAACAACGGAGGATGAA 241
Query 356 AAAACAAGAGAAGGTAGTAAGGCTTCTTTATGTCTGCTCAAAACAGGGGTATAGGAAAGA 415
|||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 242 AAAAAAAGGGAAGGTAGTAAGGCTTCTTTATGTTTGCTCAAAACAAGGGTATAGGAAAGA 301
Query 416 ACCTAAGGTCATAAAATCTTATTCACAACCAATCACACGGTGTGGTTGTAATGCTCATAT 475
||| |||||||||||||| ||||||||| ||||||| || ||| |||||||||||||||
Sbjct 302 ACCCAAGGTCATAAAATCATATTCACAAGCAATCACTCGATGT--TTGTAATGCTCATAT 359
Query 476 GACTTGCTACCTTCAG 491
||||||||||||||||
Sbjct 360 GACTTGCTACCTTCAG 375
> AT4G08596.1 | Symbols: | transposable element gene | chr4:5475880-5477918
REVERSE LENGTH=2039
Length=2039
Score = 379 bits (205), Expect = 1e-104
Identities = 321/375 (86%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 120 TCAATAAGTGAAGACGAAGCTTCAGTTAGTGAATTTGAAGAAGAAGATGACATAGCCAAC 179
|||||||||||| |||||| ||| | | ||||||||||||||||||| | ||||| | |
Sbjct 52 TCAATAAGTGAAAACGAAGTTTCGGCCAATGAATTTGAAGAAGAAGATAAAATAGCTATC 111
Query 180 AAAGACGATTATGTTCAAACTGAAGAGGTTGTTGCTTTAGAAGAAAACAAAG-TGAATGA 238
|||| | | | ||||||||||| ||||||||||| ||| || | | |||||
Sbjct 112 ---CACGA--A-G-----A-TGAAGAGGTTGCTGCTTTAGAAGCAAATAATGAT-AATGA 158
Query 239 GAAAAAAGATGAACTATGTATTGGAATGGAGTTTAGTTCTGATGAGGCTGCATATATAGC 298
||| |||||| || ||| |||||||||||||| ||||||||||| |||||||||| |
Sbjct 159 GAAGAAAGATAAAATATATATTGGAATGGAGTGCGGTTCTGATGAGATTGCATATATAAC 218
Query 299 TTATAAGCAGTATGGAGGCAATCATGGTTTCAACGTAAGGAAACAACGGAGGACGAAAAA 358
|||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 219 TTATAAAAAGTATGGAGGCAATCATGGTTTCAATATAAGAAAACAACGGAGGATGAAAAA 278
Query 359 ACAAGAGAAGGTAGTAAGGCTTCTTTATGTCTGCTCAAAACAGGGGTATAGGAAAGAACC 418
| | | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 279 A-ACGGGAAGGTAGTAAGGCTTCTTTATGTTTGCTCAAAACAAGGGTATAGGAAAGAACC 337
Query 419 TAAGGTCATAAAATCTTATTCACAACCAATCACACGGTGTGGTTGTAATGCTCATATGAC 478
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 338 CAAGGTCATAAAATCATAATCACAACCAATCACTCGGTGTGGTTGTAATGCTCATATGAC 397
Query 479 TTGCTACCTTCAGAA 493
|||||||||||||||
Sbjct 398 TTGCTACCTTCAGAA 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5