BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949394

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58980.1 | Symbols:  | F-box family protein | chr3:21794445-...   143    1e-33


> AT3G58980.1 | Symbols:  | F-box family protein | chr3:21794445-21797006 
REVERSE LENGTH=1785
Length=1785

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 106/120 (88%), Gaps = 2/120 (2%)
 Strand=Plus/Plus

Query  21   ATGGATAGAATCAGCAATCTACCAGATGAGATCATTTGTCACATTGTATCTTTTATTTCG  80
            |||||||| || |||||||||||| ||||||||||||||||||||||||||||  |||||
Sbjct  1    ATGGATAGGATTAGCAATCTACCAAATGAGATCATTTGTCACATTGTATCTTTCCTTTCG  60

Query  81   GCAAAGGAAGCTGCTT-CAGCATTGGTTCTCTCAAAGAAGTGGCAGAACCTGTTTACCAT  139
            |||||||||||||||| | |||| | |||| ||||||| ||||| ||| || ||||||||
Sbjct  61   GCAAAGGAAGCTGCTTTC-GCATCGATTCTGTCAAAGAGGTGGCGGAATCTCTTTACCAT  119



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5