BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949400
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16580.1 | Symbols: | F-box and associated interaction doma... 363 3e-99
AT1G47390.1 | Symbols: | F-box and associated interaction doma... 261 1e-68
> AT3G16580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5647376-5648746 REVERSE LENGTH=1371
Length=1371
Score = 363 bits (196), Expect = 3e-99
Identities = 355/430 (83%), Gaps = 17/430 (4%)
Strand=Plus/Plus
Query 39 CTTCCATGGGAGTTGGTTGATGAGATACTCTCTCGTGTCCCACCA-ACATCTCTTTTTCG 97
||||||||||||||| |||| |||||||||||||||||||||||| | ||||||| ||||
Sbjct 64 CTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCAGA-ATCTCTTCTTCG 122
Query 98 CTTCAGAACCGT-TTGTAAACGATGGAACGTTCTCTTCTACGACAAGACGTTCATGAACA 156
||||| |||||| | | |||| |||||||| ||||||| ||| ||||||||||| || |
Sbjct 123 CTTCAAAACCGTATCG-AAACAATGGAACGCTCTCTTCCGCGATAAGACGTTCATCAATA 181
Query 157 ACCACAAGATGACGTTTCGATTCATCTTAGCAACTGAATCAAAGATTTATTCGGTAAGCA 216
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 182 ACCACAAGATGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 241
Query 217 TCGATCCAAAGATAGAGGTGTGTGAGTTAACATTATATTTTCCTGGTTTAGAATATCA-G 275
||||||| ||||||| ||| |||||||||| ||| || |||| |||||||||| ||| |
Sbjct 242 TCGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCCGGTTTAGAATCTCATG 301
Query 276 A-A-ACCTCAATACTTGGTTGATTGCGATAAGTTCTTGCTATATGGCTTGGATAAAGGAG 333
| | |||| || | |||||||||||||||||||| || |||| || | |||| |||||||
Sbjct 302 AGATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAG 361
Query 334 CCGTGGTTTGGAATCCGTGGTTGAGACAGAGTAGATGGATAGAGTCGTCGGAGATAAAAC 393
||| ||||||| |||||| ||||||| |||| |||||| || | || | | ||||
Sbjct 362 TTGTGCTTTGGAACCCGTGGCTGAGACATAGTACATGGATCGAC-CA--GG-GTTCAAAC 417
Query 394 AA-ACTCCTATGCAAT-TCAGTGGCATAGGAGACGTCGATA-GGA-A-TTACAAGATCCT 448
| |||| ||| | | | | |||||||||| || | ||| || | |||||||||| |
Sbjct 418 CACACTCGAATGGAGTCTTA-TGGCATAGGATACAACAATAAGGGGAGTTACAAGATCTT 476
Query 449 TGCTTCTTGT 458
||||| ||||
Sbjct 477 TGCTTTTTGT 486
> AT1G47390.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17379544-17380656 FORWARD LENGTH=1113
Length=1113
Score = 261 bits (141), Expect = 1e-68
Identities = 354/451 (78%), Gaps = 37/451 (8%)
Strand=Plus/Plus
Query 691 ATCTACCATGTGAGAAGACGAACTC-CCTTAAGGATGCTCTTGTCCTCGGGGTTTTTAAG 749
|||||||||||| | || |||| | | | | |||| |||||| || || ||||| ||
Sbjct 686 ATCTACCATGTG-G-GGA-GAAC-CATCATCACGATGTTCTTGTTCTTAGGATTTTT-AG 740
Query 750 GG-AGATCGGCTTTCATTGTTAAAGCAATGCCATAAAACAAAGAAGATTGAGATTTGGGT 808
|| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 741 GGAAGATCGGCTTTCGTTGTTAAAGCAATGCCATCTAACAAAGAAGATTGAGATTTGGGT 800
Query 809 GACCAA-ATACAAGGTTA-ATACAAATCTTGCTCGTGAAG---AT---GTGGAATGGATA 860
|||||| | ||||| ||| | || ||| | | | || | || | |||||||||
Sbjct 801 GACCAAGA-ACAAGATTAGAAACTGCTCTAG-TGGAGATGTGGATTCAGCGGAATGGATG 858
Query 861 AACTTT-ATGGAAGTGTCAAGTCCTAACTTGCCGAGTCTAGTATACTACTCTCAGCCAAG 919
|| ||| ||||||||||||| || |||||||||| || | | || ||| | | | |||
Sbjct 859 AA-TTTCATGGAAGTGTCAACTCTTAACTTGCCG-GT-T--T-TAGTACAC-C--C-AAG 908
Query 920 TTACTTCATTGAAGATAAAAGGCTTGTCGTTTGCTCTTGGGACAAAATTGGTCGGGCTTG 979
||||||||| || ||||||| ||| || || || ||||| ||| ||| ||| | |||||
Sbjct 909 TTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGCGACCAAACTGGCCAAGCTTG 968
Query 980 GATATATGTTTTAGGGGAAAATAAGTTGATCAGTAAAAGTCATATAGATTATGTAGTTGA 1039
||| |||||| | ||||| ||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct 969 GATCTATGTTGTGGGGGACAATAAGTTGATCAGTAAAATTCAAATAGATTCTGTGGTTGG 1028
Query 1040 TCCTTGGCCTTTTCACTGTACCTTTATTCCT-AGTTTGGTAC-CGGTTCCTCGAAGTCAA 1097
||| |||||||| || |||| |||| |||| |||||||| | | | ||||||||||||
Sbjct 1029 TCCCTGGCCTTTGCATTGTAGCTTT-TTCCCCAGTTTGGT-CTCAATACCTCGAAGTCAA 1086
Query 1098 -CGTGAAGAACTAGCAGAATTACAAGTTTGA 1127
| | || || ||||| |||||||||||||
Sbjct 1087 AC-TAAA-AA--AGCAGCATTACAAGTTTGA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5