BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949403

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32920.1 | Symbols:  | glycine-rich protein | chr4:15887575-...   460    3e-129


> AT4G32920.1 | Symbols:  | glycine-rich protein | chr4:15887575-15896006 
REVERSE LENGTH=4877
Length=4877

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 286/302 (95%), Gaps = 9/302 (3%)
 Strand=Plus/Plus

Query  1    GAAATTAATCAATTCGTGGGATGAGACTGCGATTAGATTCGAACCGCCGTCACCTTCTCC  60
            ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  75   GAAATTAATCAATTCGTGGGATGAGACTGCGATTAGATTCGAACCACTGTCACCTTCTCC  134

Query  61   GGCGCCGGACCCTTCACCGGATGATGATGAATCGTCGGTTTCA--TG-CG-T-ACCTAGG  115
            ||||||||| ||||| |||||||||||||| ||||||||||||  ||  | | |||||||
Sbjct  135  GGCGCCGGAGCCTTCCCCGGATGATGATGATTCGTCGGTTTCATGTGTAGATGACCTAGG  194

Query  116  AGGTGTTGGCTCTTTAGATTCCACGTGTAAGCTCGTCGCTGATTTGAATCTCACACGTGA  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  AGGTGTTGGCTCTTTAGATTCCACGTGTAAGCTCGTCGCTGATTTGAATCTCACACGTGA  254

Query  176  CCTAAACATCACCGGTAAAGGTAATCTCCACGTTTTGCCTGGTGTTAGATTGGTTTGCCA  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  CCTAAACATCACCGGTAAAGGTAATCTCCACGTTTTGCCTGGTGTTAGATTGGTTTGCCA  314

Query  236  GTTCTC-GGGATGTTCGATTAGTGTCAATATCTCCGAG-AATTTCTCGTTGGCTGAGAAT  293
            ||| || ||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct  315  GTT-TCCGGGATGTTCGATTAGTGTCAATATCTCCG-GCAATTTCTCATTGGCTGAGAAT  372

Query  294  TC  295
            ||
Sbjct  373  TC  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5