BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949406

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25240.1 | Symbols:  | Protein of unknown function (DUF506) ...   475    1e-133


> AT3G25240.1 | Symbols:  | Protein of unknown function (DUF506) 
 | chr3:9192540-9193385 FORWARD LENGTH=846
Length=846

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 308/333 (92%), Gaps = 1/333 (0%)
 Strand=Plus/Plus

Query  102  ACTTTGCTTCGGAGTTCGAGATCGCAAGGCCAACACGCGAATACACACGTGTGTTGCAAG  161
            |||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||| ||
Sbjct  515  ACTTTGCTTCGGAGTTCGAGATCGCAAGGCCAACGCGCGAATACACGCGTGGGCTGC-AG  573

Query  162  TTGCTGCCTAACGTTTTCGTAGGAAAAGAAGAGAATCTGAGGACGATCGTGAGAGAGTCA  221
             ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  574  CTGCTGCCTAACGTTTTCGTAGGAAATGAAGAGAATCTAAGGACGATCGTGAGAGAGTCA  633

Query  222  TGTGACGCAGCGAAGAGGTCGTTGAAGAGCCGTGGCTTGTCTCTCCCACCGTGGCGGAGA  281
            || ||||| |||||| | ||  |||||||||||||||||||||| |||||||||||||||
Sbjct  634  TGCGACGCGGCGAAGCGATCAATGAAGAGCCGTGGCTTGTCTCTTCCACCGTGGCGGAGA  693

Query  282  AGCTCTTATTTGCAACACAAGTGGTTTAGTCCGTATAAAAGAAAGGTGGGATCTAGTTTG  341
            |||||||| || || || ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct  694  AGCTCTTACTTACAGCATAAGTGGTTTGGTCCGTACAAAAGAAAGGTGGGATCTAGTTTG  753

Query  342  GGAGTGAAGCCGTTGAATAGTGACGCCGTTAGCTGCCGCTCTTTAGGGTATGATGACGGC  401
            |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct  754  GGAGTGAAGCCGTTGAATAGTGACGCCGTTAGTTGCCGATCTTTAGGGTTTGATGACGGC  813

Query  402  GCCGTCAATACTCGTTTGTTCATTAGGGCATGA  434
            ||||||||||||||||||||||| |||||||||
Sbjct  814  GCCGTCAATACTCGTTTGTTCATCAGGGCATGA  846



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21765935317


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5