BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949410
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49210.1 | Symbols: | unknown protein; Has 3675 Blast hits ... 939 0.0
> AT5G49210.1 | Symbols: | unknown protein; Has 3675 Blast hits
to 2315 proteins in 312 species: Archae - 2; Bacteria - 342;
Metazoa - 1190; Fungi - 281; Plants - 114; Viruses - 4; Other
Eukaryotes - 1742 (source: NCBI BLink). | chr5:19949722-19951687
FORWARD LENGTH=1026
Length=1026
Score = 939 bits (508), Expect = 0.0
Identities = 586/623 (94%), Gaps = 7/623 (1%)
Strand=Plus/Plus
Query 8 AGATTCAGTGAAAATGGCGTTTTGCAATAAGCTAAGCCGTCTCGT---GAGGCAGAGTGA 64
||||| |||| ||||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 204 AGATTTAGTG-AAATGGCTTTTTGCAATAAGCTAAGCCGTTTCGTGAGGAGGCAGAGTGA 262
Query 65 GAACGCTTCCATGATTAGCTCTCTCAGGTCTTTCTCTGCTGAAGCCACTCACCATAGATT 124
||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 263 GAATGCTTCCATGATTGGCTCTCTCAGGTCTTTCTCTGCTGATGCCACTCACCATAGATT 322
Query 125 CCACCAAGAGACACACAATTTTCTTGAGCCAGAAAACTATATTGGTAGCTGGGAAGCTCC 184
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 323 CCACCAGGAGACTCACAATTTTCTTGAGCCAGAATACTATATTGGTAGCTGGGAAGCTCC 382
Query 185 GAGTGATCCGAAAGATGCAGAGAGAAAGCTTGCGCAGCTTAGGAGAGATTATGCAAAGAA 244
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 383 GAGTGATCCGAAAGATGCAGAGAGAAAGCTTGCTCAGCTTAGGAGAGATTATGCTAAGAA 442
Query 245 AGTTAAAGTGTATCGTAAAGAGTATATTCATGAGATTGAGATGCTTCGTGTTGAGAAACA 304
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 443 AGTTCGAGTGTATCGTAAAGAGTACATTCATGAGATTGAGATGCTTCGTGTTGAGAAACA 502
Query 305 GCGTAAGGATGAGGCTAGATTGTTGGCTGAACGAGCTGCTAATGAGGAGAGGCGACGGTT 364
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 503 GCGTAAGGATGAGGCTAGATTGTTGGCTGAACGAGCTGCTAATGAAGAGAGGCGACTCTT 562
Query 365 GAAGGCTGAGGCTGCTAAGGTTAGGGCTGAGGAACGTAAGATTGCTGATGAAGAGTTCAG 424
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 563 GAAGGCTGAGGCTGCTAAGGTTAGAGCTGAGGAACGTAAGATTGCTGACGAAGAGTTCAG 622
Query 425 GCAAACTCTGATTAAAGAAAGAGCAGAAAAGCTGGAGATCTGGAAGATGATGGGCCAAAA 484
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 623 GCAAACTCTGATAAAAGAAAGAGCAGAAAAGCTAGAGATGTGGAAGATGATGGGCCAAAA 682
Query 485 AAGGGAAGAGAAGATCAAAGAGAGAGAGAAGCTACTACGTGAGCAGAGTTCACTATGGAT 544
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 683 GAGGGAAGAGAAGATCAAAGAGAGAGAGAAGCTACTGCGTGAACAGAGTTCACTATGGAT 742
Query 545 TGAGCCAAAGGAACTGGAGAGGAAGATTACAGAAGCCTTGGTTGACA-CTGCTGTTCTCT 603
|||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 743 CGAGCAAAAAGAACTGGAGAGGAAGATTACAGAAGCCTTGGTTGACAAC-GTTGTTCTCT 801
Query 604 AAACCAA-GCTTCTCCCCTGAAT 625
||||||| |||||||| ||||||
Sbjct 802 AAACCAAAGCTTCTCCTCTGAAT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5