BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949412
Length=379
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 137 6e-32
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 135 2e-31
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 137 bits (74), Expect = 6e-32
Identities = 219/285 (77%), Gaps = 26/285 (9%)
Strand=Plus/Plus
Query 45 GAAGAAACTGGGTGGATCTTCCGCCGGAGTTGAC-ATCTTCGATTCTTCTCCGTCTTAAC 103
||||||||||||||||||||||||||||| |||| | ||||||| || || ||||||| |
Sbjct 128 GAAGAAACTGGGTGGATCTTCCGCCGGAGCTGACGA-CTTCGATCCTGCTGCGTCTTAGC 186
Query 104 AT-ACATGATATTCTCAACAACGCTCAGAAGGTATGCAAATCGTGGCGACGCGTATGTCA 162
| || |||||| || |||||||||||||||| || ||| |||||||||| | ||| |
Sbjct 187 CTGAC-TGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCATTTGTAA 245
Query 163 AGACCCATCAATGTGGACC-AAAATCGAGACACGAATGTCAAAAAATTTCGATGT-CTGG 220
|||||| || |||||| | |||||| | ||||| | | | || |||| |
Sbjct 246 AGACCCTTCGATGTGG-CGGAAAATC-A-ACACGC--G--AGACTGCCTC-ATGTAC--- 294
Query 221 AAGTACGATCTCGA-AGCCATGTGCCGTCACGCCGTTGATCTCAGCC-GTGGCGGTTTGC 278
|| | ||| ||| ||| |||||||||||| ||||||||||||| | || || ||||
Sbjct 295 AACTTTGATTTCGTGAGC-ATGTGCCGTCACATTGTTGATCTCAGCCAG-GGTGGCTTGC 352
Query 279 TGGAGATCAACATTGAAGA-C--TT-TGGGAGCGATTCTCTCCTC 319
| ||||||||| |||| || | || | | |||||||||||||||
Sbjct 353 TAGAGATCAACGTTGATGAACACTTCTTG-AGCGATTCTCTCCTC 396
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 135 bits (73), Expect = 2e-31
Identities = 213/277 (77%), Gaps = 23/277 (8%)
Strand=Plus/Plus
Query 50 AACTGGGTGGATCTTCCGCCGGAGTTGAC-ATCTTCGATTCTTCTCCGTCTTAACAT-AC 107
||||||||||||||||||||||||||||| | ||||||| || ||||| |||| | | ||
Sbjct 115 AACTGGGTGGATCTTCCGCCGGAGTTGACGA-CTTCGATCCTGCTCCGACTTAGCGTGAC 173
Query 108 ATGATATTCTCAACAACGCTCAGAAGGTATGCAAATCGTGGCGACGCGTATGTCAAGACC 167
|||||| || | ||||||| ||| | |||| | |||||||||| | ||| ||||||
Sbjct 174 -TGATATACTGGATAACGCTCGGAAACTGTGCAGAGCGTGGCGACGTATCTGTAAAGACC 232
Query 168 CATCAATGTGGACC-AAAATCGAGACACGAATGTCAAAAAATT--TCGATGT-CTGGAAG 223
| || |||||| | |||||| | || || | | | | || |||| | | | |
Sbjct 233 CTTCCATGTGG-CGGAAAATC-A-ACT----TG-CGAGAC-TGCCTC-ATGTAC-G-A-G 279
Query 224 TACGATCTCGA-AGCCATGTGCCGTCACGCCGTTGATCTCAGCCGTGGCGGTTTGCTGGA 282
| |||| |||| ||| |||||||||||| ||||||||||||| || || ||||| ||
Sbjct 280 TTCGATTTCGAGAGC-ATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGA 338
Query 283 GATCAACATTGAAGACTTTGGGAGCGATTCTCTCCTC 319
||| ||||||||| |||| | ||||||||||||||||
Sbjct 339 GATTAACATTGAACACTTCGTGAGCGATTCTCTCCTC 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17845050895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5