BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949422

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49300.1 | Symbols: GATA16 | GATA transcription factor 16 | ...   473    4e-133


> AT5G49300.1 | Symbols: GATA16 | GATA transcription factor 16 
| chr5:19984849-19985697 REVERSE LENGTH=642
Length=642

 Score =  473 bits (256),  Expect = 4e-133
 Identities = 298/318 (94%), Gaps = 3/318 (1%)
 Strand=Plus/Plus

Query  42   AAGAAGACTTGTGCTGATTGTGGTACAAGCAAAACCCCTCTTTGGCGTAGTGGTCCTGCT  101
            ||||||||||||||||||||||| || || ||||| |||||||||||| ||||||||| |
Sbjct  325  AAGAAGACTTGTGCTGATTGTGGAACCAGTAAAACTCCTCTTTGGCGTGGTGGTCCTGTT  384

Query  102  GGTCCTAAGTCGTTGTGTAACGCGTGTGGGATCAGAAACAGGAAGAAGAG-A-A-GAGGA  158
            ||||| ||||||||||||||||||||||||||||||||||| |||||||| | | |||||
Sbjct  385  GGTCCAAAGTCGTTGTGTAACGCGTGTGGGATCAGAAACAGAAAGAAGAGAAGAGGAGGA  444

Query  159  ACAGAGGATAATAAGAAATTAAAGAAATCGAGTTCCGGCGGCGGAAACCCTAAATTGGGT  218
            ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct  445  ACAGAAGATAATAAGAAATTAAAGAAATCGAGTTCTGGCGGCGGAAACCGTAAATTTGGT  504

Query  219  GAATCGTTAAAACAGAGGTTGATGGATTTTGGGATGACGAAGAGATCAACGGTGGAGAAG  278
            ||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||
Sbjct  505  GAATCGTTAAAACAGAGTTTGATGGATTTGGGGATAAGGAAGAGATCAACGGTGGAGAAG  564

Query  279  CAACGACGGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTAT  338
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  565  CAACGACAGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTAT  624

Query  339  GGCTCTGTTTACGCTTAG  356
            ||||||||||||||||||
Sbjct  625  GGCTCTGTTTACGCTTAG  642


 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 39/40 (98%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  3    TTGGTTGATTCAGAAACCATGAAAACAAGAGCTCAAGATA  42
            ||||||||||||||||||||||||||||||||| ||||||
Sbjct  250  TTGGTTGATTCAGAAACCATGAAAACAAGAGCTGAAGATA  289



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5