BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949423

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative ...   342    1e-93


> AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative 
| chr3:9749904-9753772 REVERSE LENGTH=3778
Length=3778

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 255/287 (89%), Gaps = 11/287 (4%)
 Strand=Plus/Plus

Query  18    CTGATGAAACGTAGGCTTGACCTTCATCTGATAGTCACATCTGCCACATTGGATGCAGAG  77
             |||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||
Sbjct  2013  CTGATGAAACGTAGACTCGACCTTCGTCTGATAGTCACGTCTGCCACATTGGATGCAGAG  2072

Query  78    AAGTTCTCTAAGTATTTCTTCAACTGCAACATTTTTACCATTCCTAGAAGAACCTTTCCT  137
             |||||||||  ||| ||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct  2073  AAGTTCTCTGGGTACTTCTTTAACTGCAACATTTTTACCATTCCTGGAAGAACATTTCCT  2132

Query  138   GTTGAGATACTATATACCAAACAGCCAGAAACAGATTACTTGGATGCAGCTTTGATCACA  197
             ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  2133  GTTGAGATACTATATACCAAACAGCCAGAAACAGATTACTTGGATGCCGCTCTGATCACA  2192

Query  198   GTCCTTCAGATTCACTTGA--G-----G-GTG-GC-ATTCTCGTCTTTT-GATGGGGCAG  246
             |||||||||||||||||||  |     | | | |  ||||| ||||||| || ||| |||
Sbjct  2193  GTCCTTCAGATTCACTTGACTGAACCTGAGGGTGATATTCTGGTCTTTTTGACGGGACAG  2252

Query  247   GAAGAGATCGATTCTGCATGCCAGTCTCTGTGCGAGAGAATGAAAGG  293
             ||||| ||||||||||| ||||||||||||| |||||| ||||||||
Sbjct  2253  GAAGAAATCGATTCTGCCTGCCAGTCTCTGTACGAGAGGATGAAAGG  2299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5