BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949424

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49310.1 | Symbols: IMPA-5 | importin alpha isoform 5 | chr5...   327    3e-89


> AT5G49310.1 | Symbols: IMPA-5 | importin alpha isoform 5 | chr5:19992016-19994516 
REVERSE LENGTH=1560
Length=1560

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 261/301 (87%), Gaps = 7/301 (2%)
 Strand=Plus/Plus

Query  21   ATGTCCTTGCGACCGAGCGCGAAGACAGAGATCCGTCGAAGCCGTTACAAGGTCTCTGTT  80
            |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| 
Sbjct  1    ATGTCCTTGCGACCGAGCACGAAGACAGAGATCCGTCGAATCCGTTACAAAGTCTCTGTA  60

Query  81   GATGCGGAAGAAGGACGCAGAAGAAGAGAAGACTTTTTAGTCGAGATTCGTAAGAACAAA  140
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||
Sbjct  61   GATGCGGAAGAAGGACGCAGAAGAAGAGAAGACTTTTTAGTCGAGATTCGCAAGAGTAAA  120

Query  141  CGCAAGGAAAGCTTGATGAAGAAACGCCGCG-ACG-GTGTTAG--TGAAGTTTTGCCTCC  196
            ||||| ||||  |||||||||||||| || | |   || || |  |   | ||  |    
Sbjct  121  CGCAACGAAAATTTGATGAAGAAACGTCGTGTAAAAGTTTT-GCCTCCTGATTA-CAAGT  178

Query  197  TGCTT-CCGACGATCCCTTTGATAGTTTGTTGGAGATAGCGAATATGATTACTGGGGTTT  255
            || || || |||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  179  TGATTTCCAACGACCCCTTTGAGAGTTTGTTGGAGATAGCGAATATGATCACTGGGGTTT  238

Query  256  TCTCGGATGATCCTTCATTGCAGCTTGAGTACACGACTCGGTTCAGGAAGATTCTATCAT  315
            |||||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||
Sbjct  239  TCTCGGATGATCCTTCATTGCAGCTTGAGTACACAACTCGGTTCAGGGTGGTTCTATCAT  298

Query  316  T  316
            |
Sbjct  299  T  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5