BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949425
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49320.1 | Symbols: | Protein of unknown function (DUF1218)... 1282 0.0
> AT5G49320.1 | Symbols: | Protein of unknown function (DUF1218)
| chr5:19995025-19996314 REVERSE LENGTH=932
Length=932
Score = 1282 bits (694), Expect = 0.0
Identities = 772/811 (95%), Gaps = 0/811 (0%)
Strand=Plus/Plus
Query 1 ATTAGAAATTGACGAGAGATATGTCGAGAGCAAGAGTACGAGCTGTGACCCATCAAGATC 60
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 81 ATTAGAAATTGACGAGAGACATGTCGAGAACAAGAGTGCGAGCTGTGACCCATCAAGATC 140
Query 61 TTGTTCCAAACCCGAAAACCACAGATCTCAGCAGCAAAACCGGTATTTTCATCGCGGTTT 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 141 TTGTTCCAAACCCTAAAACCACAGATCTCAGCAGCAAAACCGGTATTTTCATCGCTGTTT 200
Query 121 TGACTATAATCTTTGGCCTCTCCTGCTTTGTTCTTTGCCTCTTTGCCGAAGCAACGAGAT 180
|||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||
Sbjct 201 TGACAATAATCTTTGGCCTCTCCTGCTTTGTTCTCTGCCTCTATGCCGAAGCCACAAGAT 260
Query 181 CTCAGGCGACATGGGGAAGCAAAACGTGCGTGTATAACGGTAGCGGGAAAACGCCGTTGT 240
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 261 CTCAGGCGACATGGGGAAGCAAAACATGCGTGTATAATGGTAGCGGGAAAACGCCGTTGT 320
Query 241 TGTGCGGTGCGATTGCGTTCGTGGGACTAGCGGTGGCGATGGTGGGCTTGCACATGTACT 300
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 321 TGTGTGGTGCGATTGCGTTTGTGGGACTAGCGGTGGCGATGGTGGGCTTCCACATGTACT 380
Query 301 TACTTATCGCAGTTACCACATCGCCACCGATGGTTCTGGTTGAGTGGGATCCTGACTCTG 360
||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 381 TACTTATCGCAGTCACCACATCGCCGTCTCTGGTTCTGGTTGAGTGGGATCCTGACTCTG 440
Query 361 TTCCTGCGAAGAGGCTCACGTTTCAAGCTGCCTTCTTCTTCGTCTCAACATGGGTTTGCT 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTCCTGCGAAGAGGCTCACTTTTCAAGCTGCCTTCTTCTTCGTCTCAACATGGGTTTGCT 500
Query 421 TTGGTGTTGGAGAGGTTCTACTGTTGGTTGCACTTAGTGTGGAATCAGGACATCTAAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TTGGTGTTGGAGAGGTTCTACTGTTGGTTGCACTTAGTGTGGAATCAGGACATCTAAAGA 560
Query 481 ACTGGTCTAAGCCAAAACCGACTTGTCTAGTAATCCGACAAGGCTTGTTTTCAGCGGCCG 540
|||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 561 ACTGGTCTAAACCAAAACCTAGTTGTCTAGTAATCCGGCAAGGCTTGTTTTCAGCGGCCG 620
Query 541 GAGTGTTCTCACTTCTAACCGTCTTTCTAGCCACGGGACTTTACCTAACCGCTCTACAAG 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 621 GAGTGTTCTCACTTATAACCGTCTTTCTAGCCACGGGACTTTACCTAACCGCTCTTCAAG 680
Query 601 CACATAGAATCTCTAAGGATCTTCAAAATACACATAGAGAAATCCTCGAGGCATCAGTTC 660
||||| ||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||
Sbjct 681 CACATCGAATCTCTAAGGATCTTGAAAACACACATAGAGAGATCATCGAGGCATCAGTTC 740
Query 661 TTTATGCATCTCCTCCAAGATCGCCCACGAATCGGATGGCTACGGTAGCTCGAGAAGGTC 720
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 741 TTTATGCATCTCCTCCAAGATCGCCTACAAATCGGATGGCTACGGTTGCTCGAGAAGGTC 800
Query 721 CTGCTACGGTTAGAGATGAGTCGACGTCTTTGGAATATCTTGTTTCTTTAAAGCAAATTG 780
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 801 TTGCTACTGTTAGAGATGAATCGACGTCTTTGGAATATCTTGTTTCTTTAAAGCAACTTG 860
Query 781 CACATATAGTATAGTGTACAATGTATAGTAG 811
|||||||||||||||||||||||||||||||
Sbjct 861 CACATATAGTATAGTGTACAATGTATAGTAG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5