BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949426
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49330.1 | Symbols: MYB111, ATMYB111, PFG3 | myb domain prot... 1602 0.0
> AT5G49330.1 | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein
111 | chr5:19998952-20001378 REVERSE LENGTH=1309
Length=1309
Score = 1602 bits (867), Expect = 0.0
Identities = 1005/1072 (94%), Gaps = 7/1072 (1%)
Strand=Plus/Plus
Query 1 AGAAGAGATCGAGAGAAACGATGGGAAGGGCTCCGTGTTGCGAGAAAATCGGGTTGAAGA 60
|||||||| | ||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 68 AGAAGAGA-C-CGAGAAGCAATGGGAAGGGCTCCGTGTTGTGAGAAAATCGGGTTGAAGA 125
Query 61 GAGGTCGATGGACCGCCGAGGAAGATGAGATTCTAACCAACTATATTCAGACCAATGGTG 120
|||| ||||||| ||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 126 GAGGGAGATGGACAGCCGAGGAAGATGAGATCCTCACCAAGTATATTCAGACCAATGGTG 185
Query 121 AAGGTTCTTGGCGATCTTTGCCTAAGAAAGCTGGATTGTTGAGATGTGGAAAGAGCTGTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AAGGTTCTTGGCGATCTTTGCCTAAGAAAGCTGGATTGTTGAGATGTGGAAAGAGCTGTA 245
Query 181 GACTAAGGTGGATAAACTATTTAAGAAGAGACTTGAAAAGAGGAAATATTACGGCCGACG 240
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 246 GACTAAGGTGGATAAACTACTTAAGAAGAGACTTAAAAAGAGGAAATATTACTTCCGACG 305
Query 241 AAGAAGAAATAATCGTCAAGTTGCATTCCCTTCTCGGCAACAGATGGTCACTTATTGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AAGAAGAAATAATCGTCAAGTTGCATTCCCTTCTCGGCAACAGATGGTCACTTATTGCAA 365
Query 301 CACATCTACCAGGAAGAACAGACAACGAAATTAAAAACTATTGGAACTCACATCTCAGCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CACATCTACCAGGAAGAACAGACAACGAAATTAAAAACTATTGGAACTCACATCTCAGCC 425
Query 361 GCAAAATCTACGCCTTCACTGCCGTTTCCGGAGACGAACACAATCTAGTCGTCGACGATT 420
|||||||||| ||||||||||||||||||||||| | |||||||||| ||||| |||||
Sbjct 426 GCAAAATCTATGCCTTCACTGCCGTTTCCGGAGATGGACACAATCTACTCGTCAACGATG 485
Query 421 TAGTCCTGAAGAAATCTTGTTCTTCGTCTACTGGAGCCAAGAACAATATTAAGACCaaga 480
||||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 486 TAGTCTTGAAGAAATCTTGTTCATCGTCTTCTGGAGCCAAGAACAATAACAAGACCAAGA 545
Query 481 agaagaagaaaggaagaaCTAGTAGGTCATCCATGAAGAAACACAAACAAATGGTGACGG 540
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 546 AGAAGAAGAAGGGAAGGACTAGTAGGTCATCCATGAAGAAACACAAGCAAATGGTGACGG 605
Query 541 CCTCGCAATGTTTCTCACAACCTAAAGAGCTAGAGAGTGAGATCAATGAGGGAGAGAAAA 600
|||| |||||||||||||||||||| |||||||||||||| ||| |||||||| | |||
Sbjct 606 CCTCACAATGTTTCTCACAACCTAAGGAGCTAGAGAGTGATTTCAGTGAGGGAGGGCAAA 665
Query 601 ATGGTAATTTCGAAGGAGAGTCTTTGGGGCCTTATGAGTGGTTGGATGGTGAGATAGAAC 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 666 ATGGTAATTTTGAAGGAGAGTCTTTGGGGCCTTATGAGTGGTTGGATGGTGAGTTAGAAC 725
Query 661 GGCTCTTGAGTGGTTGTGTCTGGGAGTGTACTAGTGAAGAACCTGTGATTGGAGTAAATG 720
||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 726 GGCTCTTGAGTAGTTGTGTCTGGGAATGCACTAGTGAAGAGGCTGTGATTGGAGTAAATG 785
Query 721 ATGAAAAGGTTTGTGAGAGTGGGGACAATAGTAGTTGTTGTGTCGGTTTGTTTGAAGAAG 780
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 786 ATGAAAAGGTGTGTGAGAGTGGGGACAATAGTAGTTGTTGTGTTAATTTGTTTGAAGAAG 845
Query 781 AACAAGGAAGCGAGACAAAGATTGGTCACATAGGAATTACAAACGTTGATGATCATGATA 840
||||||||||||||||||||||||||||| ||||||| ||| | |||||| |||||||
Sbjct 846 AACAAGGAAGCGAGACAAAGATTGGTCACGTAGGAATCACAGAGGTTGAT---CATGATA 902
Query 841 TGAAGGTAGAAA-AGGAAAGAGAGGGAAGTGTTTTGAGTTCGACTTCGAATGAAAGTAAT 899
||| ||| |||| || |||||||||||||| |||| ||||||| ||| ||||||| ||||
Sbjct 903 TGACGGTGGAAAGAG-AAAGAGAGGGAAGTTTTTTAAGTTCGAATTCAAATGAAAATAAT 961
Query 900 GATAAAGATTGGTGGGTTGGTCTATGTAATTCTTCAGAAGTTGGGTTTGGGATTGATGAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 962 GATAAAGATTGGTGGGTTGGTCTATGTAATTCTTCAGAAGTTGGGTTTGGGGTTGATGAG 1021
Query 960 GAGTTGCTTGATTGGGAGTTTCAAGGTAATGTGACTTGTCAAAGTGATGATCTCTGGGAT 1019
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1022 GAGTTGCTTGATTGGGAGTTTCAAGGTAATGTCACTTGTCAAAGTGATGATCTATGGGAT 1081
Query 1020 CTCTCAGATATTGGAGAGATAACATTGGAGTGATACTACCGAGCAAGTGGAT 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CTCTCAGATATTGGAGAGATAACATTGGAGTGATACTACCGAGCAAGTGGAT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5