BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949430
Length=2365
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49360.1 | Symbols: BXL1, ATBXL1 | beta-xylosidase 1 | chr5:... 3735 0.0
> AT5G49360.1 | Symbols: BXL1, ATBXL1 | beta-xylosidase 1 | chr5:20011879-20016742
REVERSE LENGTH=2708
Length=2708
Score = 3735 bits (2022), Expect = 0.0
Identities = 2251/2364 (95%), Gaps = 5/2364 (0%)
Strand=Plus/Plus
Query 1 AAACACAGATATATATAAACATGTCTTGTAATAATAAAGCATTATTAATCGGCAACAAAG 60
||||||||||||||| ||| ||||||||| ||||||||||| |||| |||||||||||||
Sbjct 66 AAACACAGATATATA-AAA-ATGTCTTGTTATAATAAAGCACTATTGATCGGCAACAAAG 123
Query 61 TCGTCGTTATACTTGTATTCCTCTTATGCTTGGTTCACTCGTCAGAGTCACTTCGGCCAC 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 124 TCGTCGTTATACTTGTATTCCTCTTATGTTTGGTTCACTCGTCAGAGTCACTTCGACCAC 183
Query 121 TCTTTGCATGCGACCCGGCAAACGGGTTAACCCGGACGCTCCGGTTCTGTCGGGTCAATG 180
| |||||||| || || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 184 TGTTTGCATGTGATCCAGCAAACGGGTTAACCCGGACGCTCCGGTTCTGTCGGGCCAATG 243
Query 181 TACCGATCCATGTGAGGGTTCAAGATTTGATCGGAAGGCTCACGTTGCAGGAGAAGATCC 240
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 TACCGATCCATGTGAGAGTTCAAGATTTGCTCGGAAGGCTCACGTTGCAGGAGAAGATCC 303
Query 241 GCAACCTCGTCAACAATGCTGCCGCCGTTCCACGCCTCGGTATTGGAGGCTATGAGTGGT 300
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 304 GCAACCTCGTCAACAATGCTGCCGCCGTACCACGTCTCGGTATTGGAGGCTATGAGTGGT 363
Query 301 GGTCCGAGGCTCTCCACGGCGTTTCCGACGTTGGTCCTGGCTCTAAGTTCGGTGGTGCTT 360
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct 364 GGTCCGAGGCTCTCCACGGCATTTCCGACGTTGGTCCAGGCGCTAAGTTCGGTGGTGCTT 423
Query 361 TTCCCGGCGCCACCAGCTTCCCTCAGGTCATAACTACCGCAGCTTCTTTCAACCAGTCTC 420
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 424 TTCCCGGTGCCACCAGCTTCCCTCAGGTCATCACCACCGCAGCTTCTTTCAACCAGTCTC 483
Query 421 TATGGGAAGAGATCGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGAGGCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 484 TATGGGAAGAGATCGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGTGGCG 543
Query 481 TGGCCGGTCTGACATATTGGAGTCCAAATGTGAATATATTGAGGGACCCACGGTGGGGCC 540
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 544 TGGCCGGTCTGACATATTGGAGTCCGAATGTGAATATCTTGAGGGACCCGCGGTGGGGCC 603
Query 541 GAGGCCAAGAAACTCCCGGAGAAGACCCTATCGTCGCTGCAAAATACGCCGCCAGCTATG 600
||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| |
Sbjct 604 GAGGCCAAGAAACTCCCGGAGAAGATCCTATCGTTGCCGCAAAATATGCCGCCAGCTACG 663
Query 601 TCCGGGGACTTCAGGGCACCGCCGCCGGAAACCGCCTTAAAGTGGCCGCATGTTGCAAAC 660
|||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||
Sbjct 664 TCCGGGGACTTCAGGGTACTGCTGCCGGTAACCGCCTTAAAGTCGCCGCATGTTGCAAAC 723
Query 661 ATTACACTGCTTATGATCTTGATAATTGGAATGGCGTCGACCGTTTCCACTTCAACGCTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATTACACTGCTTATGATCTTGATAATTGGAATGGCGTCGACCGTTTCCACTTCAACGCTA 783
Query 721 AGGTCACCCAACAAGATTTAGAGGACACATATAATGTGCCATTCAAATCATGTGTTTACG 780
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 784 AGGTCACCCAACAAGATTTAGAGGACACATACAACGTGCCATTCAAATCATGTGTTTACG 843
Query 781 AAGGAAAGGTCGCGAGTGTAATGTGTTCGTACAACCAAGTCAATGGAAAGCCCACATGTG 840
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AAGGAAAAGTAGCGAGTGTAATGTGTTCGTACAACCAAGTCAATGGAAAGCCCACATGTG 903
Query 841 CTGATGAAAATCTCTTAAAGAACACTATTCGTGGTCAATGGCGTCTCAATGGGTACATTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CTGATGAAAATCTCTTAAAGAACACTATTCGTGGTCAATGGCGTCTCAATGGGTACATTG 963
Query 901 TCTCAGATTGTGATTCTGTTGATGTTTTCTTCAACCAACAACATTACACTAGCACTCCGG 960
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TCTCAGATTGTGACTCTGTTGATGTTTTCTTCAACCAACAACATTACACTAGCACTCCGG 1023
Query 961 AGGAAGCCGCCGCC-GCCTCCATTAAAGCCGGTTTGGATTTGGATTGTGGGCCGTTTTTG 1019
| |||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1024 AAGAAGCCGCCGCCAGA-TCCATTAAAGCCGGTTTGGACTTGGACTGCGGGCCGTTTTTG 1082
Query 1020 GCGATTTTCACGGAAGGTGCGGTGAAGAAAGGATTGTTAACGGAGAATGACATCAATTTA 1079
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GCGATTTTCACGGAAGGTGCAGTGAAGAAAGGATTGTTAACGGAGAATGACATCAATTTA 1142
Query 1080 GCACTTGCTAATACATTAACAGTCCAAATGAGACTTGGTATGTTTGATGGCAATCTTGGG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1143 GCACTTGCTAATACATTAACAGTCCAAATGAGACTTGGTATGTTTGATGGTAACCTTGGG 1202
Query 1140 CCATACGCTAATCTTGGGCCACGAGATGTTTGTTCTCTGGCCCATAAACATTTAGCCCTT 1199
|| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||
Sbjct 1203 CCGTACGCTAATCTTGGGCCAAGAGATGTTTGTACTCCGGCCCATAAACATTTAGCTCTT 1262
Query 1200 GAAGCAGCCCATCAAGGAATTGTTCTTCTCAAAAACTCTGGTCGCTCTCTTCCACTCTCC 1259
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1263 GAAGCAGCCCATCAAGGGATTGTTCTTCTCAAAAACTCTGCTCGCTCTCTTCCACTCTCC 1322
Query 1260 CTCAGGCGCCACCGCACCGTCGCCGTGATCGGACCTAACTCCGATGTCACTGAGACTATG 1319
| ||| ||||||||||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 1323 CCCAGACGCCACCGCACCGTCGCCGTGATTGGTCCAAACTCCGACGTCACTGAGACTATG 1382
Query 1320 ATCGGAAACTATGCAGGGAAAGCATGCGCCTATACGACGCCGTTGCAAGGAATTTCAAGA 1379
||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1383 ATCGGCAACTATGCAGGGAAAGCATGCGCCTATACGTCGCCGTTGCAAGGGATTTCAAGA 1442
Query 1380 TACGCGAGGACACTTCACCAAGCTGGTTGTGCTGGCGTGGCTTGCAAAGGGAACCAAGGA 1439
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1443 TACGCGAGGACACTTCACCAAGCTGGCTGTGCCGGCGTGGCTTGCAAAGGGAACCAAGGA 1502
Query 1440 TTTGGTGCGGCGGAAGCAGCAGCGCGTGAAGCCGACGCGACGGTTCTTGTGATGGGATTG 1499
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TTTGGTGCAGCGGAGGCAGCGGCGCGTGAAGCCGACGCGACGGTTCTTGTGATGGGATTA 1562
Query 1500 GATCAGTCGATAGAGGCGGAGACACGAGATCGAACCGGGCTTCTCTTACCGGGTTATCAA 1559
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 GATCAGTCGATAGAGGCAGAGACACGAGATCGAACCGGGCTTCTCTTACCGGGTTATCAA 1622
Query 1560 CAAGACCTAGTGACCCGTGTGGCTCAAGCTTCTAGAGGCCCAGTCATTTTGGTCCTTATG 1619
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1623 CAAGACCTAGTGACCCGTGTAGCTCAAGCTTCTAGAGGTCCAGTCATTTTGGTCCTTATG 1682
Query 1620 AGTGGTGGACCAATCGATGTAACCTTCGCTAAGAATGATCCACGTATTTCTGCCATCATT 1679
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1683 AGTGGTGGACCAATCGATGTAACCTTCGCTAAGAATGATCCTCGTGTTGCTGCCATCATT 1742
Query 1680 TGGGCCGGGTATCCGGGTCAAGCGGGTGGAGCTGCCATCGCCAATATCATCTTTGGTGCT 1739
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TGGGCTGGGTATCCGGGTCAAGCGGGTGGAGCTGCCATCGCCAATATCATCTTTGGTGCT 1802
Query 1740 GCTAATCCTGGAGGAAAGCTACCAATGACATGGTATCCACAAGATTATGTGGCAAAAGTG 1799
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1803 GCTAATCCCGGAGGAAAACTACCAATGACATGGTATCCACAAGATTACGTGGCCAAAGTG 1862
Query 1800 CCAATGACGGTAATGGCTATGAGAGCATCCGGAAATTACCCAGGAAGGACATACAGATTT 1859
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1863 CCAATGACGGTAATGGCCATGAGAGCATCCGGTAATTATCCAGGAAGGACATACAGATTC 1922
Query 1860 TACAAAGGTCCAGTGGTGTTCCCATTTGGGTTCGGTTTAAGTTACACTACCTTCACTAAT 1919
|||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1923 TACAAAGGTCCAGTAGTATTTCCATTTGGGTTCGGTTTAAGTTACACTACCTTCACTCAT 1982
Query 1920 AGTTTGGCCAAAAGCCCATTGGCCCAACTATCAGTTTCACTCTCCAATCTCAACTCTGCC 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1983 AGTTTGGCCAAAAGCCCATTGGCCCAACTATCAGTTTCACTCTCCAATCTCAACTCTGCC 2042
Query 1980 AATGCCATTCTCAACTCTACATCACACTCCATCAAAGTGTCTCACACCAACTGCAATTCG 2039
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 AATACCATTCTCAACTCTTCATCACACTCCATCAAAGTGTCTCACACCAACTGCAATTCA 2102
Query 2040 TTTCCGAAAATGCCCCTCCACGTGGAAGTGTCGAACACCGGTGAATTCGACGGAACACAC 2099
||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||||
Sbjct 2103 TTTCCGAAAATGCCCCTTCACGTCGAAGTATCAAACACAGGTGAATTCGATGGAACACAC 2162
Query 2100 ACGGTGTTTGTCTTTGCCGAGCCGCCGAAAAACGGAATAAAAGGATTGGGTGTGAACAAA 2159
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2163 ACGGTGTTTGTATTTGCTGAGCCGCCGATAAACGGAATAAAAGGATTGGGTGTGAACAAA 2222
Query 2160 CAGTTGATAGCGTTTGAGAAGGTTCATGTCATGGCAGGGGCAAAACAGACCGTTCGAGTT 2219
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2223 CAATTGATAGCGTTCGAGAAGGTTCATGTCATGGCAGGGGCAAAACAGACCGTTCAAGTT 2282
Query 2220 GATGTTGATGCTTGCAAGCATCTTGGTGTAGTGGATGAGTATGGAAAGAGGAGAATCCCG 2279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 GATGTTGATGCTTGCAAGCATCTTGGTGTAGTGGATGAGTATGGAAAGAGGAGAATCCCA 2342
Query 2280 ATGGGTGAACATAAGCTGCACATTGGTGACCTTAAACATACTATTTTGGTCCAACCACAA 2339
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2343 ATGGGTGAGCATAAGCTGCACATTGGTGACCTTAAACATACTATTTTGGTCCAACCGCAA 2402
Query 2340 CTTTGAGGGAGGCATATAAAAAAC 2363
|||||| ||| ||||| |||||||
Sbjct 2403 CTTTGACGGACGCATA-AAAAAAC 2425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117419074755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5