BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949441
Length=518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 712 0.0
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 374 6e-103
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 712 bits (385), Expect = 0.0
Identities = 441/469 (94%), Gaps = 0/469 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTCCGTTACTGAGTCATGATGCAAACGCTTCTCCAATTCGATCTCAGATTCGGCG 60
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 349 TCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCG 408
Query 61 TTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAATCGGTTGCGTCGGAGAAATCG 120
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 409 TTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCG 468
Query 121 TGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGTCATGAACGAT 180
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 469 TGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGAT 528
Query 181 TTCGCGTCACGGATCTCGTCCATACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCTTG 240
| || ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 529 TCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTG 588
Query 241 AAGATCGACCGTCTGGTGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTTGA 300
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 589 AAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGA 648
Query 301 TGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 708
Query 361 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCACGTTTGAAG 420
||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 709 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAG 768
Query 421 GAGCTCCAATGGAGCAGCAAGCGTTGTTGGAGCTTGAAGACACAGCGGC 469
||||||| ||||||||||||||||| ||||||||||||| || |||||
Sbjct 769 GAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 374 bits (202), Expect = 6e-103
Identities = 385/471 (82%), Gaps = 22/471 (5%)
Strand=Plus/Plus
Query 1 TCGAGTTCCGTTACTG-AGTCATGATGCAAACGCTTCTCCAATTC-GATCTCA-GATTCG 57
|||| ||||||||| | | |||||||||| ||||| |||||| || ||||| | ||||||
Sbjct 375 TCGAATTCCGTTACCGTA-TCATGATGCACACGCTCCTCCAA-TCTGATCT-ACGATTCG 431
Query 58 GCGTTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAA-TCGGTTGCGTCGGAGAA 116
|||| || |||||||| |||| || || ||||| || ||| | || || || ||||||
Sbjct 432 GCGTAGTTTACTCCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAA 490
Query 117 ATCGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGTCATGA 175
||||||| ||||||||||||||||||||||||||||| || | |||| |||||||| ||
Sbjct 491 GTCGTGAAACACGAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGA 549
Query 176 ACGATTTCGCGTCACGGATCTCGTCCATACGAAACCTTACCTCGTCGC-GAAGGTGACGT 234
|||||| || |||||| || |||| | ||||||||| ||||| |||| |||| | ||||
Sbjct 550 ACGATTCCGAGTCACGAATGTCGTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGT 608
Query 235 GGCTTGAAGATCGACCGTCTGGTGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGA 292
||||||||||||| || || |||||||| ||||| || || || || || || || ||
Sbjct 609 GGCTTGAAGATCGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGA 666
Query 293 GGTTTTGATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGA 352
||| | ||||||||||||||| | || ||||||||||||||||| || | || || ||
Sbjct 667 AGTTCTAATGAAAGAAGTGATTAGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGA 726
Query 353 A-TCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCA 411
| | ||| |||||||||| ||||||||||||||| ||||| ||||| ||| | || || |
Sbjct 727 AGT-TCAAGATCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTA 785
Query 412 CGTTTGAAGGAGCTCCAATG-GAGCAGCAAGCGTTG-TTGGAGCTTGAAGA 460
|||||||||||||||| | | ||||||||||||||| ||| ||||||||||
Sbjct 786 CGTTTGAAGGAGCTCCTA-GAGAGCAGCAAGCGTTGCTTG-AGCTTGAAGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24765434471
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5