BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949445
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49520.1 | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding prot... 1967 0.0
> AT5G49520.1 | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein
48 | chr5:20090776-20093346 FORWARD LENGTH=1793
Length=1793
Score = 1967 bits (1065), Expect = 0.0
Identities = 1191/1248 (95%), Gaps = 23/1248 (2%)
Strand=Plus/Plus
Query 1 GATTCCATC-TTT-TCTATTACATGGAGAATAAGAAAGAAGAGGATCATCATCAT-AATC 57
||||||||| ||| |||||||||||||||| || ||||||||||||||||||||| || |
Sbjct 93 GATTCCATCTTTTCTCTATTACATGGAGAAGAAAAAAGAAGAGGATCATCATCATCAA-C 151
Query 58 Tacaacaacaacaacaaaaggagatcaagaacacagagacaaagat----c--gaacaag 111
||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 152 AACAACAACAACAACAAAAGGAGATCAAGAACACAGAGACAAAGATCGAGCAAGAACAAG 211
Query 112 aacaagaacagaaacaagaaatctctcaagcatcatcatcatcaaacatggcgaatctag 171
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 AACAAGAACAAAAACAAGAAATCTCTCAAGCATCATCATCATCAAACATGGCGAATCTAG 271
Query 172 ttacgtcatcagatcatcatcaGTTGGAGCTAGCTGGAAATCTCTCAAGCATCTTCGATA 231
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 272 TTACGTCATCAGATCATCATCCGTTGGAGCTAGCTGGAAATCTCTCAAGCATCTTCGATA 331
Query 232 CTTCATCTTTACCTTTTCCTTATTCTTATTTCGAAGATCACTCTTCTAATAATCCCAATT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 332 CTTCATCTTTACCTTTTCCTTATTCTTATTTCGAAGATCACTCTTCTAATAATCCTAATT 391
Query 292 CTTTCCTCGACTTGCTCCGACAAGATCATCATCAATTTGCTTCTTCCTCTAATTCCTCTT 351
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 392 CTTTCCTAGACTTGCTCCGACAAG---ATCATCAGTTTGCTTCTTCCTCTAATTCCTCTT 448
Query 352 CTTTTTCCTTCGATGCCTTTCCTCTTCCC---AACAACAACAACA--AC-TTTTTTACGG 405
||||||| ||||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 449 CTTTTTCATTCGATGCCTTTCCTCTCCCCAATAACAACAACAACACCTCTTTTTTTACGG 508
Query 406 ATTTGCCCTTGCCTCAAGCTGAGTCATCAGAAGTTGTGAACACAACACCGACTTCTCCAA 465
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 509 ATTTGCCCTTACCTCAAGCTGAGTCATCAGAAGTCGTGAACACAACACCGACTTCTCCAA 568
Query 466 ACTCAACCTCAGTCTCATCTTCCTCTAACGAAGCTGCAAATGATAACAACAGTGGAAAAG 525
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 569 ACTCAACCTCAGTCTCATCTTCCTCCAACGAAGCTGCAAATGATAACAACAGTGGTAAAG 628
Query 526 AAGTTACTGTTAAAGATCAAGAAGAAGGAGATCAACAACAAGAGCAAAAGGGTACTAAGC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AAGTTACTGTTAAAGATCAAGAAGAAGGAGATCAACAACAAGAGCAAAAGGGTACTAAGC 688
Query 586 CACAGTTGAAGGCAAAGAAGAAGAACCAGAAGAAAGCTAGAGAAGCTAGGTTTGCGTTTC 645
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 689 CACAGTTGAAGGCAAAGAAGAAGAATCAAAAGAAAGCTAGAGAAGCTAGGTTTGCGTTTC 748
Query 646 TGACTAAGAGTGATATTGATAATCTTGACGACGGTTATAGGTGGAGAAAATACGGCCAAA 705
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TGACGAAGAGCGATATTGATAATCTTGACGACGGTTATAGGTGGAGAAAATACGGCCAAA 808
Query 706 AAGCTGTCAAAAACAGTCCTTATCCCAGAAGCTATTACCGTTGCACCACAGTGGGTTGCG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 AAGCTGTCAAAAACAGTCCTTATCCCAGAAGCTATTACCGTTGCACCACAGTGGGTTGCG 868
Query 766 GAGTGAAGAAGAGAGTGGAGAGATCCTCCGATGATCCTTCAATCGTCATGACAACCTACG 825
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 869 GAGTGAAGAAGAGAGTGGAGAGATCCTCCGATGATCCTTCGATCGTCATGACAACCTACG 928
Query 826 AAGGTCAACACACTCACCCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTGACAT 885
||||||| || || || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 929 AAGGTCAGCATACCCATCCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTCACGT 988
Query 886 CACCAATCCTAGATCACGGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGC 945
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CACCAATCCTAGACCACGGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGC 1048
Query 946 CACGTTACTTGCTGACTCAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CACGTTACTTGCTGACTCAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAA 1108
Query 1006 ATATGATCAATAGAAGCTCATCCGATGGTACTTTCGTAAATCCAGAG-CCATCATCATCA 1064
||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1109 GTATGATCAATAGAAGATCATCCGATGGCACTTTCGTAAATCCAG-GTCCATCATCATCA 1167
Query 1065 TTCCCCGGATTTGGTTATGATATGTCACAAGCTTCTACATCAACTTCTTCTTCCATTAGA 1124
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1168 TTCCCCGGCTTTGGTTATGATATGTCTCAAGCTTCTACTTCAACTTCTTCTTCCATTAGA 1227
Query 1125 GATCATGGATTGCTTCAAGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GATCATGGATTGCTTCAAGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACT 1287
Query 1185 CAAACCAATGAAGAGAATAAGAAATGA-GCAACttttttttCCCGGGG 1231
||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1288 CAAACCAATGAAGAGAATAAGAAATGAAG-AAGTTTTTTTTCCCGGGG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5