BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949448

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49525.1 | Symbols:  | unknown protein; Has 23 Blast hits to...   276    9e-74


> AT5G49525.1 | Symbols:  | unknown protein; Has 23 Blast hits 
to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:20097040-20097486 REVERSE 
LENGTH=447
Length=447

 Score =  276 bits (149),  Expect = 9e-74
 Identities = 188/206 (91%), Gaps = 5/206 (2%)
 Strand=Plus/Plus

Query  92   CATACCGGTGGCCGGA-GTGAATCTTTCATACCTGAGCTCTGGTTGGAACATGAGATTGT  150
            ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct  171  CATTCCGGTGGCCGGAGGTGAATCTTTCATCCCTGAGCTCTGGTTGGAACATGAGATTGT  230

Query  151  TGTCGTTGTCGGGTAATCTCTCCATAATCGATGATCTTTTGTGGAGTTTTGTCTCGATCG  210
            |||| ||||||||| ||||||||||| | |||||||||||||||||||||||||| ||| 
Sbjct  231  TGTCCTTGTCGGGTGATCTCTCCATAGTTGATGATCTTTTGTGGAGTTTTGTCTCAATCA  290

Query  211  TTGAATCTTTAGCTATCGTTACTACGATCTGTTGCTTCTTCTTGTTTTGTGGTTGTACCC  270
            |||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||||
Sbjct  291  TTGAATCTTTAGCTATCACTGCTACGGTCTGTTGCTTCTTCTTGTTTTGTGGTTGTACCC  350

Query  271  TTTAATTCCTTCttttttttCATTAT  296
            | |||||||  |||||||  ||||||
Sbjct  351  TCTAATTCC--CTTTTTT--CATTAT  372


 Score =  163 bits (88),  Expect = 8e-40
 Identities = 92/94 (98%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  1    TTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCGTCGTATCTGTCGTCATCG  60
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  107  TTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCATCGTACCTGTCGTCATCG  166

Query  61   TGGGCATTCCGGTGGCCGGAGGTGAATCTTTCAT  94
            ||||||||||||||||||||||||||||||||||
Sbjct  167  TGGGCATTCCGGTGGCCGGAGGTGAATCTTTCAT  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5