BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949461

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49600.1 | Symbols:  | Protein of unknown function, DUF538 |...   778    0.0  
  AT5G49610.1 | Symbols:  | F-box family protein | chr5:20131274-...  69.4    3e-11


> AT5G49600.1 | Symbols:  | Protein of unknown function, DUF538 
| chr5:20130780-20131295 FORWARD LENGTH=516
Length=516

 Score =  778 bits (421),  Expect = 0.0
 Identities = 487/519 (94%), Gaps = 3/519 (1%)
 Strand=Plus/Plus

Query  22   ATGGTGACAGAAGCCATGAAAGCCAAGGCAGAGGTGTACCATGGAGACAAGATATGCAGA  81
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGGTGACAGAAGCCATGAAAGCCAAGGCAGAGGTGTACCATGGAGACAAGACATGCAGA  60

Query  82   GAGAAATTCGGTTCACTTTTATCCGAAATCGGGTTACCCAACCGGCTCCTTAGTAACAAG  141
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   GAGAAATTCGGTTCGCTTTTATCCGAAATCGGGTTACCAAACCGGCTCCTTAGTAACAAG  120

Query  142  GAGATCGAAGAATGTGGATACGTGAAAGACACGGGTTTTGTGTGGTTAAAGCACaagaag  201
            |||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||| ||
Sbjct  121  GAGATCAAAGAATGTGGATACGTGAAGGACACGGGTTTCGTTTGGTTAAAGCACAAGGAG  180

Query  202  aagaagaaagaagaCCAGAAAAGGAGATATCAAGACTTGTTTAGATTTGATAACGTTGTG  261
            |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| 
Sbjct  181  AAGAAGAAAGAAGATCAGAAAAGGAGATATCAAGACTTGTTAAGATTCGATAACGTTGTC  240

Query  262  GTATGTTTCGAAGATGAAGTCACTGCATATTTCGAGCCTAACAGGATCAAGAAACTCACT  321
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  GTATGTTTCGAAGATGAAGTCACTGCGTATTTCGAGCCTAACAGGATCAAGAAACTCACT  300

Query  322  GGGGTTAAGGCTAAGGAGTTCATGGTTTGGATCTCACTCGGCGAGATTCAAGTGAACCGT  381
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  301  GGGGTTAAGGCTAAGGAGTTCATGGTTTGGATCTCGCTTGGCGAGATTCAAGTGAACCGT  360

Query  382  TCCTCTGGTTTGATTACGTTCAAGACACAGGTCGGTTTATTGTCTAAGTCGTTGCCTTTG  441
            ||||||||||||||||| || |||||  |||||||||||||||| ||||| |||||||||
Sbjct  361  TCCTCTGGTTTGATTACATTTAAGACTGAGGTCGGTTTATTGTCCAAGTCATTGCCTTTG  420

Query  442  TCAGTGTTTGAAGACGTTCAGGGTGATGATCATGATCTCAAGGAGAAGCCAGAAAAGGTT  501
            || ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |  
Sbjct  421  TCGGTGTTTGAAGACGTTCATGGTGATGATCATGATCTCAAGGAGAAGCCAAAAAAAG--  478

Query  502  CAACCAAAATTCAACAAAACCACAATATATTTGTACTAA  540
             ||| |||| |||||||||||| ||| ||||||||||||
Sbjct  479  -AACTAAAACTCAACAAAACCAAAATCTATTTGTACTAA  516


> AT5G49610.1 | Symbols:  | F-box family protein | chr5:20131274-20132729 
REVERSE LENGTH=1456
Length=1456

 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  519   AACCACAATATATTTGTACTAAAAGCAACAGAAGAAATCAACT  561
             ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  1456  AACCAAAATCTATTTGTACTAAAAGCAACAGAAGAAATCAACT  1414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5