BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949462
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49610.1 | Symbols: | F-box family protein | chr5:20131274-... 1814 0.0
> AT5G49610.1 | Symbols: | F-box family protein | chr5:20131274-20132729
REVERSE LENGTH=1456
Length=1456
Score = 1814 bits (982), Expect = 0.0
Identities = 1076/1121 (96%), Gaps = 7/1121 (1%)
Strand=Plus/Plus
Query 2 GTATTTGATTGATCTGTTAATGGATAACCAAAAAGGTGCTCTCTTTCCCGATGAGGTTAT 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GTATTTGATTGATCTGTTAATGGATAACCAAAAAGGTGCTCTCTTTCCCGATGAGGTTAT 243
Query 62 TCTCCAGATTCTTGCTAGATTACCTGTTAAATCTCTCTTCAGGTTCAAATCCGTTTGCAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TCTCCAGATTCTTGCTAGATTACCTGTTAAATCTCTCTTCAGGTTCAAATCCGTTTGCAA 303
Query 122 ATCTTGGTACAGATTACCTTCTGACAAGTACTTCACTTCCTTGTTCAA-CAAAGTCTCTG 180
||| ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||
Sbjct 304 ATCATGGTACAGATTACCTTCTGACAAATATTTCACTTCCTTGTTCAATCAAC-TCTCTG 362
Query 181 TAAAAGATCAATTGCTTGTGGCTGAAGTATCAGATTCTTCTAGTTTGATCTGTGTTGATA 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TAAAAGAGCAATTGCTTGTGGCTGAAGTATCAGATTCTTCTAGTTTGATCTGTGTTGATA 422
Query 241 ATCTGGGAGGTGTTTCTGAATTATCATTGGATTTTGTTAGAGATAGGGTGAGGATTAGGG 300
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATCTGAGAGGTGTTTCTGAGTTATCATTGGATTTTGTTAGAGATAGGGTGAGGATTAGGG 482
Query 301 TTTCTTGTAATGGTTTATTGTGTTGCTCTAGCATTCCTGAAAAGGGTGTTTACTATGTTT 360
|||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 483 TTTCTTCTAATGGTTTGTTGTGTTGTTCAAGCATTCCTGAAAAGGGTGTTTACTATGTTT 542
Query 361 GTAATCCGTCGACTAGAGAGTATAGGAAATTGCCTAAGAGTCGAGAAAGACCCGTTACTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 543 GTAATCCGTCGACTAGAGAGTATAGGAAATTGCCTAAGAGTCGAGAAAGACCTGTTACTC 602
Query 421 GGTTTTATCCTGATGGTGAGGCAACTCTTGTTGGCTTGGCTTGTGATTTGAGTAGGAATA 480
||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||| |
Sbjct 603 GGTTTTACCCTGATGGTGAGGCTACTCTTGTTGGTTTGGCTTGTGATTTGAGTAAGAACA 662
Query 481 AGTTTAATGTGGTGTTGGCTGGTTACCATAGGTCTTTTGGTCAGAGACCTGATGGGAGTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AGTTTAATGTGGTGTTGGCTGGTTACCATAGGTCTTTTGGTCAGAGACCTGATGGGAGTT 722
Query 541 TCATTTGCTTGGTGTTTGATTCTGAGACTAACAAATGGAGGAAGTTTGTTTCGGTGTTAG 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 723 TCATTTGCTTGGTGTTTGATTCTGAGAGTAACAAATGGAGGAAGTTTGTTTCGGTGTTAG 782
Query 601 AAGAATGTAGTTTCACACATATGAGTAAGAACCAAGTTGTGTTTGTTAATGGAATTCTTC 660
||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 783 AAGAATGTAGTTTCACACACATGAGTAAGAACCAAGTGGTGTTTGTTAATGGGATGCTTC 842
Query 661 ATTGGTTGATGAGTGGCTTGTGTTATATACTTGCACTTGATGTTGAACATGATGTGTGGA 720
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 843 ATTGGTTGATGAGTGGTTTGTGTTATATACTTGCGCTTGATGTTGAACATGATGTGTGGA 902
Query 721 GAAAGATTTCTTTACCTGATGAGATTAGA-TGTGGGAATGGTGGT---AATCGGGTCTAT 776
||||||||||||| || |||||||||||| | ||||||||||||| |||||||| |||
Sbjct 903 GAAAGATTTCTTTGCCCGATGAGATTAGAAT-TGGGAATGGTGGTGGTAATCGGGTTTAT 961
Query 777 CTATTGGAATCCGATGGGTTTTTGTCGGTGATTCAACTATCAGATGGATGGACGAAGATT 836
|| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 962 CTCTTGGAATCCGATGGGTTTTTGTCGGTGATTCAGTTATCAGATGTATGGATGAAGATT 1021
Query 837 TGGAAGATGAGTGAGTATGAGACTGAAACTTGGAGTGTTGTTGATAGCATAAGTTTAAGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGGAAGATGAGTGAGTATGAGACTGAAACTTGGAGTGTTGTTGATAGCATAAGTTTAAGG 1081
Query 897 TGTATTAAAGGATTGGTACCTGGAATATTCCCGATTTGTCAGACCGGTGAGTATGTTTTC 956
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1082 TGTATTAAAGGCTTGGTACCTGGAATCTTCCCGATTTGTCAGACCGGTGAGTATGTTTTC 1141
Query 957 TTGGCTACTCATAAACAGGTTTTGGTGTATCAAAGACGAAGTAAGTTATGGAAAGAAATG 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1142 TTGGCTACTCATAAACAGGTTTTGGTGTATCAAAGACGAAGTAAGTTATGGAAAGAGATG 1201
Query 1017 TTTTCTGTGAAAGGAAGCTCTTCTCTGCCTTTGTGGTTCTCTGCTCACGCCTTTCGCAGC 1076
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTTTCTGTAAAAGGAAGCTCTTCTCTGCCTTTGTGGTTCTCTGCTCACGCCTTTCGCAGC 1261
Query 1077 ACCATAGTACCCTGTAATTAACATGTTTGTGTTGCCTTCTC 1117
||||||||||||||||||||||||||| ||||||||||||
Sbjct 1262 ACCATAGTACCCTGTAATTAACATGTTAATGTTGCCTTCTC 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54768794595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5