BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949467

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   303    7e-82
  AT5G28672.1 | Symbols:  | transposable element gene | chr5:1070...  93.5    2e-18


> AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G30520.1); 
Has 249 Blast hits to 117 proteins in 25 species: 
Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants 
- 112; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). 
| chr3:13451438-13452807 REVERSE LENGTH=993
Length=993

 Score =  303 bits (164),  Expect = 7e-82
 Identities = 202/221 (91%), Gaps = 0/221 (0%)
 Strand=Plus/Plus

Query  169  GTTTCAAAGATCCTACACCTCTTGGTAGAGAATTTATCGTTGATAAGTTTAACAAGGAGT  228
            |||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||||||
Sbjct  14   GTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAGTTTAACAAGGAGT  73

Query  229  TTAATCTTAACATAAATTATCGGTTCTTCAAAGAAAATCTTGATCAACTAAAAAGAAAGT  288
            |||||||||| ||||||||||  ||| |||||||||| ||||||||||||||||||||||
Sbjct  74   TTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAACTAAAAAGAAAGT  133

Query  289  GCAAGAAGTACAAGCATCTGATGAAAAATTTCACGGGCATCTCGGTTGATACTACTACAT  348
             ||||||||||||| | || |||||||| | ||||||||| |||||||||||||||||||
Sbjct  134  ACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTTGATACTACTACAT  193

Query  349  CTGTGATATCGGCATCTAACTCATGGTGGCAAGAGAGTGAA  389
            ||||||||||  ||||||||||||||||||||||| |||||
Sbjct  194  CTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAA  234


> AT5G28672.1 | Symbols:  | transposable element gene | chr5:10700385-10701826 
FORWARD LENGTH=1442
Length=1442

 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 62/67 (93%), Gaps = 4/67 (6%)
 Strand=Plus/Plus

Query  379   AAGAG-AGTGAAGTATACCTGATGGAAATCATATGGC-AAATATAAGATAAAATATTGCT  436
             ||||| ||||  ||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct  1149  AAGAGAAGTG--GTATACCTGATGGAAATCATATGGCAAAATATAAGAGAAAATATTGCT  1206

Query  437   GATATGT  443
             |||||||
Sbjct  1207  GATATGT  1213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5