BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949509
Length=2356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49960.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3613 0.0
> AT5G49960.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20323964-20327828
REVERSE LENGTH=2825
Length=2825
Score = 3613 bits (1956), Expect = 0.0
Identities = 2211/2335 (95%), Gaps = 14/2335 (1%)
Strand=Plus/Plus
Query 23 GGAAAAACCAGTGGCGGTGCCGAGTCAATCCCCGAGTCAGAGGATAACTCGGTTGTGGAC 82
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 318 GGAAAAACCAGTGCCGGTGCCGAGTCAATCCCCGAGTCAGAGGATAACTCGGTTATGGAC 377
Query 83 TCATTTTTCCCTCACTCATTGCCTCAAATTCAGTTGTTCCTTTTCTTTTACTTATGTGAT 142
||| || || ||||||||||| |||||||||| |||||| | ||||||||||||||||||
Sbjct 378 TCAGTTCTCTCTCACTCATTGTCTCAAATTCATTTGTTCATGTTCTTTTACTTATGTGAT 437
Query 143 GTTTCTTCGGTCTAAAGTTTCAAGATTAGAGGCAGAGAATTTAATCCTTGTAACAAGATG 202
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 438 GTTTCTTCGGTCTAAAGTTTCAAGACTAGAGGCAGAGAATATAATCCTTCTAACAAGATG 497
Query 203 TAACAGTAGCAGAGTTCCAGGCAGTGACAACAATGAGATGGAAGAAACTAATTCTAGAGC 262
| | | | || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 498 T---A--A-C--AG-T--A-GCAGTGACAACAATGAGATGGAAGAAACTAATTCTAGAGC 545
Query 263 TGTTGTTTTATTCTA-TGTGATTATTACCTTTGTGTTGCCATTGTTGTTGTATATGTATC 321
||||||||| ||| | ||| ||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 546 TGTTGTTTTCTTC-AGTGTCATTATCACCTTTGTGTTACCATTTTTGTTGTACATGTATC 604
Query 322 TTGACGATCTCTCTCATATCAAGAATCTACTGAGACGAACAAATCAGAAGAAAGAAGAAG 381
||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 605 TTGACGATCTCTCACATGTCAAGAATCTACTAAGACGAACAAATCAGAAGAAAGAAGACG 664
Query 382 TTCCTTTGAAGAAAAGAATAGCTTATTCATTGGATGTGTGTTTTTCAGTATATCCATATG 441
||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 665 TTCCTTTGAAGAAGAGACTAGCTTATTCGTTGGATGTGTGTTTTTCAGTGTATCCATATG 724
Query 442 CTAAGCTGCTTGCTCTTCTGTTGGCAACTGTAGTTCTTATAGTATATGGTGGCTTAGCGT 501
||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 725 CTAAGCTTCTTGCTCTTCTGTTGGCAACTGTTGTTCTTATAGTTTATGGTGGATTAGCAT 784
Query 502 TGTATGCAGTTAGTGACTGTGGGGTTGATGAAGCACTTTGGTTATCGTGGACTTTTGTAG 561
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 785 TGTATGCTGTTAGTGACTGTGGGGTTGATGAAGCCCTTTGGTTATCGTGGACTTTTGTAG 844
Query 562 CGGATTCTGGAAGCCACGCTGATAGAGTTGGTGTTGGAGCAAGAATTGTTTCTGTGGCTA 621
||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 845 CGGATTCGGGAAGTCATGCTGATAGAGTTGGTGTTGGAGCAAGAATAGTTTCTGTTGCTA 904
Query 622 TAAGTGCTGGAGGTATGTTGATATTTGCTACAATGCTTGGACTCATTTCTGATGCTATAT 681
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 905 TAAGTGCAGGTGGTATGTTGATATTTGCTACAATGCTTGGACTCATTTCAGATGCTATCT 964
Query 682 CAAAGATGGTGGATTCTCTACGGAAAGGGAAAAGTGAAGTTCTTGAAAGCAATCATATAC 741
| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 965 CGAAGATGGTAGATTCGCTACGGAAAGGGAAAAGTGAAGTTCTTGAAAGTAATCATATAC 1024
Query 742 TAATTCTTGGATGGAGTGATAAATTGGGTTCACTCTTGAAGCAGCTGGCGATAGCAAATA 801
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1025 TAATTCTTGGATGGAGTGATAAATTGGGGTCACTTTTGAAGCAGCTGGCAATAGCAAATA 1084
Query 802 AAAGCATTGGTGGAGGTGTTGTGGTGGTGCTAGCAGAACGAGATAAGGAAGAGATGGAGA 861
|||| |||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1085 AAAGTATTGGTGGCGGTGTTGTGGTTGTGTTAGCAGAACGAGACAAGGAAGAGATGGAGA 1144
Query 862 CTGATATTGCCAAATTTGAATTTGATTTAATGGGAACATCAGTTATATGTAGAAGTGGCA 921
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CTGATATTGCTAAATTTGAATTTGATTTAATGGGAACATCAGTTATATGTAGAAGTGGCA 1204
Query 922 GTCCACTTATACTAGCTGATCTGAAGAAGGTTTCAGTCTCAAATGCGCGTGCTATCATTG 981
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1205 GTCCACTTATACTAGCTGATCTGAAGAAGGTTTCAGTCTCGAATGCACGTGCTATCATTG 1264
Query 982 TACTAGGATCTGATGAAAACGCGGATCAGAGCGATGCACGTGCCTTAAGGGTTGTACTCA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1265 TACTAGGATCTGATGAAAACGCGGATCAGAGCGATGCACGTGCCTTAAGGGTTGTGCTTA 1324
Query 1042 GTCTTACAGGAGTAAAGGAGGGTTGGAAGGGGCATGTTGTGGTTGAAATGTGTGATCTGG 1101
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1325 GTCTTACAGGAGTAAAGGAGGGTTGGAAGGGACATGTTGTGGTTGAAATGTGTGATCTAG 1384
Query 1102 ACAACGAGCCATTAGTGAAGCTTGTTGGTGGAGAACGCATTGAAACAGTTGTAGCTCATG 1161
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 ACAATGAGCCATTGGTAAAGCTTGTTGGTGGAGAACGCATTGAAACAGTTGTAGCTCATG 1444
Query 1162 ATGTGATTGGACGCCTTATGATACAATGCGCTCTTCAACCTGGCCTGGCGCAGATATGGG 1221
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1445 ATGTGATTGGACGCCTTATGATACAATGCGCTCTTCAACCTGGTCTTGCGCAGATATGGG 1504
Query 1222 AGGATATTTTAGGCTTTGAGAACGCCGAATTTTACATAAAGAAGTGGCCTCAGCTTGATG 1281
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1505 AGGATATTTTAGGATTTGAGAACGCTGAATTTTACATAAAGAAGTGGCCTCAGCTTGATG 1564
Query 1282 GTTACCGTTTTGAAGATGTCCTCATTTCATTTCCCAATGCGATTCCCTGCGGAGTTAAGG 1341
||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1565 GTTACTGTTTTGAAGATGTCCTCATTTCATTTCCTAATGCGATTCCTTGCGGAGTTAAGG 1624
Query 1342 TTGCAGCAGATGGGAAGATAGTTTTGAATCCTAGTGACGACTATGTTCTGAAAGAAGGTG 1401
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1625 TTGCAGCTGATGGGAAGATAGTTTTGAATCCTAGTGATGACTATGTTCTGAAAGAAGGTG 1684
Query 1402 ATGAAATACTTGTTATAGCCGAGGATGATGACACTTACACTCCTGGTTCACTTCCGGAGG 1461
||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||
Sbjct 1685 ATGAAATACTTGTTATAGCAGAGGATGATGACACTTACGCTCCTGGTTCTCTTCCGGAGG 1744
Query 1462 TACGGATGTGTCATTTTCCAAAAATGCAGGATCCTCCGAAATATCCAGAGAAAATACTAT 1521
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1745 TACGGATGTGTCATTTTCCCAAAATGCAGGATCCTCCAAAATATCCAGAGAAAATACTTT 1804
Query 1522 TTTGTGGATGGCGCCGTGACATTGATGATATGATCAAGGTGCTAGAAGCTCTGCTTGCGC 1581
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 TTTGTGGATGGCGTCGTGATATTGATGATATGATCAAGGTGCTAGAAGCTCTGCTTGCGC 1864
Query 1582 CTGGATCTGAGTTATGGATGTTTAATGAGGTTCCAGATCAAGAAAGAGAGAGAAAGTTGA 1641
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1865 CTGGATCTGAGTTATGGATGTTTAACGAGGTTCCAGATCAAGAAAGAGAGAAAAAGTTGA 1924
Query 1642 CAGATGCAGGACTAAATATATCCAAATTGGTCAATATAAAACTTGTGCATAGGCAGGGAA 1701
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1925 CAGATGCAGGACTAAATATATCCAAATTGGTGAATATAAAACTTGTGCATAGGCAGGGAA 1984
Query 1702 ATGCAGTTATCAGACGTCATTTAGAGAGTCTCCCTTTAGAAACTTTTGATTCAATCTTAA 1761
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1985 ATGCAGTGATCAGGCGTCATTTAGAGAGTCTCCCTCTAGAAACTTTTGATTCAATCTTAA 2044
Query 1762 TTCTTGCAGAACAGTCACTGGAGAACTCTATTGTTCATTCAGACTCTCGATCTCTTGCCA 1821
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 TTCTTGCAGAACAGTCACTAGAGAACTCTATTGTTCATTCAGACTCTCGATCTCTTGCCA 2104
Query 1822 CGCTTCTCCTTATTCGAGATATACAGTCGAAACGGCTTCCCTACAAAGATGCAAAGTCAA 1881
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2105 CGCTTCTCCTTATTCGGGATATACAGTCGAAACGGCTTCCATACAAAGATGCAAAGTCAA 2164
Query 1882 GCGCTTTACGGATATCCGGGTTCCCCAATTGCTGTTGGATCCGTAAAATGCAGCAAGCTT 1941
|||| ||||||||||| || ||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2165 GCGCGTTACGGATATCTGGATTCCCAAATTGCTGTTGGATTCGTAAGATGCAGCAAGCTT 2224
Query 1942 CAGATAAATCAATTGTGATAAGTGAAATTCTTGATTCAAGAACAAAGAACCTTGTATCTG 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 CAGATAAATCAATTGTGATAAGTGAAATTCTTGATTCAAGAACAAAGAACCTTGTATCTG 2284
Query 2002 TGTCCAGAATCAGTGATTACGTACTATCGAATGAGTTAGTTAGTATGGCTCTTGCGATGG 2061
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2285 TGTCAAGAATCAGTGATTACGTACTCTCGAATGAGTTAGTTAGTATGGCTCTTGCGATGG 2344
Query 2062 TCGCAGAGGATAAACAAATAAACCGTGTTTTAAAAGAGCTTTTTGCGGAAAAGGGTAATG 2121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2345 TCGCAGAGGATAAACAAATAAACCGTGTTTTAAAAGAGCTTTTCGCGGAAAAGGGTAATG 2404
Query 2122 AATTGTGCATAAGACCTGCAGAGTTTTACATATATGACCAAGAAGAGGTTTGCTTTTATG 2181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 AATTGTGCATAAGACCTGCAGAGTTTTACATATATGACCAAGAAGAGGTTTGCTTTTATG 2464
Query 2182 ATATAATGAGAAGGGCTCGACAAAGACAGGAAGTCATAATCGGTTATCGCCTTGCGGGAA 2241
||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||
Sbjct 2465 ATATAATGAGAAGGGCTCGTCAAAGGCAAGAAATCATAATCGGTTATCGCCTTGCGGGAA 2524
Query 2242 TGGAGCAAGCTGTGATTAATCCTACAGATAAATCCAAGCTTACAAAATGGTCCCTTGATG 2301
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 2525 TGGAGCAAGCTGTGATTAACCCTACTGATAAATCCAAGCTTACTAAATGGTCCCTTGATG 2584
Query 2302 ATGTTTTTGTAGTCATCGCCTCTAGTCAGTAAGTTACAAAAACCGTAGATGATCT 2356
|||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 2585 ATGTTTTTGTTGTCATCGCCTCAAGTCAGTAACTTACAAAACCCGTAGATGATCT 2639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116967269850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5