BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949514
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50000.1 | Symbols: | Protein kinase superfamily protein | ... 1978 0.0
> AT5G50000.1 | Symbols: | Protein kinase superfamily protein
| chr5:20342587-20345133 REVERSE LENGTH=1509
Length=1509
Score = 1978 bits (1071), Expect = 0.0
Identities = 1131/1161 (97%), Gaps = 0/1161 (0%)
Strand=Plus/Plus
Query 17 GACAATGAAAGAAGGAAACGATGGTTTTGTTCGAGCAGATCAGATTGATCTAAAAAGCTT 76
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 97 GACAATGAAAGAAGGAAAGGATGGGTTTGTTCGAGCAGATCAGATTGATCTAAAAAGCTT 156
Query 77 AGACGAGCAACTAGAGAGACACTTAAGCAGAGCTTTGACTTTagagaagaacaagaagaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 AGACGAGCAACTAGAGAGACACTTAAGCAGAGCTTTGACTTTAGAGAAGAACAAGAAGAA 216
Query 137 agatgaagaagaaACAACCGCCGTCGCCATCGGTGGCTCTGCTTCTTCTTCCCCCGTCAC 196
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 217 AGATGAAGAAGACACAACCGCCGTCGCCATCGGTGGCTCTGCTTCTTCTTCCCCTGTCAC 276
Query 197 TCTAAACGGCGGTGGATTTGTAGGGAAGAGGAAACAGAGACTTGAGTGGGAGATCGATCC 256
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 277 TCTAAACGGCGGCGGATTTGTTGGCAAGAGGAAACAGAGACTTGAGTGGGAGATCGATCC 336
Query 257 TTCTAAACTTATCATCAAGACTGTTCTTGCACGTGGCACTTTTGGTACCGTTCATCGTGG 316
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 337 TTCTAAACTTATCATCAAGACTGTTCTTGCTCGTGGCACTTTTGGTACCGTTCATCGTGG 396
Query 317 TATCTACGACGGTCAAGATGTTGCCGTGAAGTTGCTTGATTGGGGTGAAGAAGGTCATAG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TATCTACGACGGTCAAGATGTTGCCGTGAAGTTGCTTGATTGGGGTGAAGAAGGTCATAG 456
Query 377 GTCAGAAGCTGAGATTGTGTCTTTGAGAGCTGATTTTGCTCAGGAGGTTGCTGTTTGGCA 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATCAGAAGCTGAGATTGTGTCTTTGAGAGCTGATTTTGCTCAGGAGGTTGCTGTTTGGCA 516
Query 437 TAAATTGGATCATCCTAATGTTACTAAGTTTATAGGAGCTACAATGGGTGCATCAGGTTT 496
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 517 TAAATTGGATCATCCTAATGTCACCAAGTTTATAGGAGCAACAATGGGTGCATCAGGGTT 576
Query 497 ACAGTTGCAGACAGAGAGTGGTCCATTAGCAATGCCAAACAATATATGTTGTGTTGTTGT 556
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 577 ACAGTTGCAAACAGAGAGTGGTCCATTAGCTATGCCAAACAATATATGTTGTGTTGTTGT 636
Query 557 TGAATATCTTCCAGGTGGTGCTTTAAAATCTTACCTGATCAAGAACAGAAGAAGAAAATT 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 637 TGAATATCTTCCAGGTGGTGCTTTAAAATCTTACCTGATCAAGAACAGAAGAAGAAAACT 696
Query 617 AACATTTAAAATTGTTGTTCAGCTCGCTCTTGATCTCGCTAGAGGGTTGAGTTACCTTCA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AACATTTAAAATTGTTGTTCAGCTCGCTCTTGATCTCGCTAGAGGGTTGAGTTACCTTCA 756
Query 677 TTCGCAGAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGTTGTTAGACAAAACCCG 736
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 757 TTCGCAGAAGATTGTTCACCGAGATGTAAAGACAGAGAATATGTTGTTAGACAAAACCCG 816
Query 737 GACTGTTAAAATTGCGGATTTTGGAGTTGCGAGAGTTGAAGCATCTAACCCTAATGACAT 796
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GACTGTTAAAATCGCAGATTTTGGAGTTGCGAGAGTTGAAGCATCTAACCCTAATGACAT 876
Query 797 GACAGGAGAGACTGGCACCCTTGGCTACATGGCTCCTGAGGTTCTCAATGGAAACCCGTA 856
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 877 GACAGGAGAGACTGGCACACTTGGCTACATGGCGCCTGAGGTTCTCAATGGAAACCCGTA 936
Query 857 TAACCGAAAATGCGATGTATACAGTTTCGGGATCTGCTTATGGGAGATATATTGCTGTGA 916
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TAATCGAAAATGCGATGTATACAGTTTCGGGATCTGCTTATGGGAGATATATTGCTGTGA 996
Query 917 CATGCCATACCCTGACCTTACTTTCTCTGAGGTCACTTCAGCCGTCGTCCGCCAGAACTT 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 997 CATGCCATACCCTGACCTTACTTTCTCTGAGGTCACTTCAGCCGTCGTCCGCCAGAACCT 1056
Query 977 GAGACCCGATATACCGAGGTGTTGCCCGAGCGCACTTGCAGCAGTGATGAAGCGATGTTG 1036
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1057 GAGACCCGATATACCGAGGTGTTGCCCGAGCGCACTTGCAGCTGTGATGAAGCGATGTTG 1116
Query 1037 GGATGCAAATCCAGACAAGAGACCGGAGATGGACGAGGTTGTACCGATGTTGGAGAGTAT 1096
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1117 GGATGCAAATCCGGACAAGAGACCGGAGATGGATGAGGTTGTACCAATGTTGGAGAGTAT 1176
Query 1097 TGACACAACCAAGGGAGGAGGGATGATCCCTAACGACCAGCAGCAGGGTTGCCTCTGCTT 1156
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1177 TGACACAACCAAGGGAGGAGGGATGATTCCTAACGACCAGCAACAGGGTTGCCTATGCTT 1236
Query 1157 CCGAAGGAAACGTGGTCCTTA 1177
|||||||||||||||||||||
Sbjct 1237 CCGAAGGAAACGTGGTCCTTA 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5