BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949517
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26762.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 307 6e-83
> AT1G26762.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 15 Blast hits to 15
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:9253631-9254167 FORWARD LENGTH=537
Length=537
Score = 307 bits (166), Expect = 6e-83
Identities = 329/405 (81%), Gaps = 21/405 (5%)
Strand=Plus/Plus
Query 104 TTCTCCTGCTTGATGGTTCTATCCTTAGCCGAAAGGATTGGTGTTTTGAAGA-CATTCGA 162
||||||||||||| |||| |||| |||||| ||||||| |||| || |||| | | | |
Sbjct 2 TTCTCCTGCTTGACGGTTATATCTTTAGCCAAAAGGATCGGTGCTTCCAAGATC-TACAA 60
Query 163 AGTCACCTTGT-ATCAAAAAAGCTATCGCTTCGAC--A-ATGCTCCG-TTATTGTCC-TT 216
|| ||||| || | |||| | || ||||||||||| | |||||||| ||| || || ||
Sbjct 61 AGACACCTCGTGA-CAAAGATGCCATCGCTTCGACGAAGATGCTCCGTTTA-TG-CCTTT 117
Query 217 GTAGCAGACAGTTTGGCACTTAAGAAAGCATTCTTAGATGCTTGTTTTGCTTCTTTGAAG 276
|||||| || ||||||| || |||||| |||||||| ||||||||||||||||||||||
Sbjct 118 GTAGCATACGGTTTGGCCCTCAAGAAAACATTCTTAAATGCTTGTTTTGCTTCTTTGAA- 176
Query 277 CAGTTTCTCTTCCCAAAATTCCCTCTTGTTTGGAGTCCTATGGATGATCAAGACTTGTCG 336
|||||| | ||||||||||||| ||| | | |||| ||||||||||||||||||||||
Sbjct 177 CAGTTTATTTTCCCAAAATTCCTTCTAG--T-GAGTGGTATGGATGATCAAGACTTGTCG 233
Query 337 GTATTGCAAGGTTCCTCCT-CCCGACTGATAGTCCCCTCTACCTTTGTCGAAGAGTTTAT 395
||||||||||||| | || |||| || |||||||||| | ||||||| | ||||||| |
Sbjct 234 GTATTGCAAGGTTT-TACTTCCCGGCTTATAGTCCCCTTTGCCTTTGTGGTAGAGTTTGT 292
Query 396 AACCGTTCAGGTTATTATCCATGTGGTCAATCAAGAAGATATTGA-GATTGTACTTGTTT 454
|||| || ||||| ||| ||| | |||| ||||||| || ||| | |||||||||| |
Sbjct 293 AACCTTTGGGGTTACTATGAATGCGATCAAGCAAGAAG-TAGTGAAGCTTGTACTTGTAT 351
Query 455 GTTGGTCTCTTATATTCTCCTTGT--GATTTGTAACTTATCTATC 497
|| | |||||||| | ||| || | |||||||| ||||||||||
Sbjct 352 GTCGATCTCTTATGTGCTCTTTCTTTGATTTGTATCTTATCTATC 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23861219825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5