BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949517 Length=500 Score E Sequences producing significant alignments: (Bits) Value AT1G26762.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 307 6e-83 > AT1G26762.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9253631-9254167 FORWARD LENGTH=537 Length=537 Score = 307 bits (166), Expect = 6e-83 Identities = 329/405 (81%), Gaps = 21/405 (5%) Strand=Plus/Plus Query 104 TTCTCCTGCTTGATGGTTCTATCCTTAGCCGAAAGGATTGGTGTTTTGAAGA-CATTCGA 162 ||||||||||||| |||| |||| |||||| ||||||| |||| || |||| | | | | Sbjct 2 TTCTCCTGCTTGACGGTTATATCTTTAGCCAAAAGGATCGGTGCTTCCAAGATC-TACAA 60 Query 163 AGTCACCTTGT-ATCAAAAAAGCTATCGCTTCGAC--A-ATGCTCCG-TTATTGTCC-TT 216 || ||||| || | |||| | || ||||||||||| | |||||||| ||| || || || Sbjct 61 AGACACCTCGTGA-CAAAGATGCCATCGCTTCGACGAAGATGCTCCGTTTA-TG-CCTTT 117 Query 217 GTAGCAGACAGTTTGGCACTTAAGAAAGCATTCTTAGATGCTTGTTTTGCTTCTTTGAAG 276 |||||| || ||||||| || |||||| |||||||| |||||||||||||||||||||| Sbjct 118 GTAGCATACGGTTTGGCCCTCAAGAAAACATTCTTAAATGCTTGTTTTGCTTCTTTGAA- 176 Query 277 CAGTTTCTCTTCCCAAAATTCCCTCTTGTTTGGAGTCCTATGGATGATCAAGACTTGTCG 336 |||||| | ||||||||||||| ||| | | |||| |||||||||||||||||||||| Sbjct 177 CAGTTTATTTTCCCAAAATTCCTTCTAG--T-GAGTGGTATGGATGATCAAGACTTGTCG 233 Query 337 GTATTGCAAGGTTCCTCCT-CCCGACTGATAGTCCCCTCTACCTTTGTCGAAGAGTTTAT 395 ||||||||||||| | || |||| || |||||||||| | ||||||| | ||||||| | Sbjct 234 GTATTGCAAGGTTT-TACTTCCCGGCTTATAGTCCCCTTTGCCTTTGTGGTAGAGTTTGT 292 Query 396 AACCGTTCAGGTTATTATCCATGTGGTCAATCAAGAAGATATTGA-GATTGTACTTGTTT 454 |||| || ||||| ||| ||| | |||| ||||||| || ||| | |||||||||| | Sbjct 293 AACCTTTGGGGTTACTATGAATGCGATCAAGCAAGAAG-TAGTGAAGCTTGTACTTGTAT 351 Query 455 GTTGGTCTCTTATATTCTCCTTGT--GATTTGTAACTTATCTATC 497 || | |||||||| | ||| || | |||||||| |||||||||| Sbjct 352 GTCGATCTCTTATGTGCTCTTTCTTTGATTTGTATCTTATCTATC 396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23861219825 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5