BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949519
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50030.1 | Symbols: | Plant invertase/pectin methylesterase... 922 0.0
> AT5G50030.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:20354589-20355627 FORWARD
LENGTH=819
Length=819
Score = 922 bits (499), Expect = 0.0
Identities = 572/608 (94%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 1 TAAAACCTTTTTCCGGCGACGAAATGGCTTCTTACTCTGGTTGTTTCCTCGTCGTTACTT 60
||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct 55 TAAAATATTTTTCCGGCGACGCAATGGCTTCTTACTCCGGTTGTTTCTTCGTCGTTACTT 114
Query 61 TGGCAGTTCTGTCACAATTTCTCTTAGCCCCAGCTTCAGCCTTGGTCAACAGAGAATTCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 115 TGGCAGTTCTGTCACAATTTCTCTTAGCCCCAGCTTCAGCCTTGGTCAACAGGGAATACA 174
Query 121 TCGATGCCAATTGCCAACGAGTCAAAAACAAA-CAATTCTGCATCCAAACATTGACCACC 179
||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||||||
Sbjct 175 TCGATTCCAATTGCCAAAGAGTCAAAAACAAAGCC-TTCTGCATCCAAACTTTGACCACC 233
Query 180 TATCCTCCTACCGCTGCTGCCACCGGCCTGTTGCCATTGGCGGAGGCCGTGGTCGGCCTT 239
||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 234 TATCCTCCTGCCGCTGCTGCCACCGGCCTGTTACCATTGGCTGAGGCCGTGGTTGGCCTT 293
Query 240 GCAATATCCCATTGCGAGAAAACAGCCGGTTTCGCAGCCGAGACAGCCAAAAAGGACGCA 299
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 294 GCAATATCCCACTGCGAGAAGACAGCTGGTTTCGCAGCAGAGACAGCCAAAAAGGACGCA 353
Query 300 ACATTGAAGACGCAGTTCAATGAGTGCCACGACGCCTATGTTGGTATTTTGGCTTCTCTA 359
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 354 ACATTGAAGACTCAGTTCAACGAGTGCCACGACGCCTATGTTGGTATTTTGGCGTCTCTA 413
Query 360 AAAAGCGCTCTATTGGAACTCAAGGACTCACCAGACACTGCCAACTACGACGTCATGGTT 419
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AAGAGCGCTCTACTGGAACTCAAGGACTCACCAGACACTGCCAACTACGACGTCATGGTT 473
Query 420 TCTGGCGATGAAATAAGGCGTGTGAAGGGTTTGGTCGAGAAAAACACCGATACCGCTTCC 479
||||||||||| | ||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 474 TCTGGCGATGATACAAGGCGTGTGAAGGGTTTGGTCGAGAAAAACACTGACACTGCTTCC 533
Query 480 AAGACGCTTATGGAGATGACATTGCAGATGGAGAAGCTTCTTGATCTCGCTGCTGGAGCC 539
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 534 AAGACGCTTATGGAGATGACACTGCAGATGGAGCAGCTTCTTGATCTCGCTGCTGGAGCC 593
Query 540 ACCGATGCTGTTGACGACGATGATGAGAACTTACATCGTCGTGCTTGAAGTTTGAAACTA 599
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 ACCGATGCTGCTGACGACGACGATGAGAACTTACATCGTCGTGCTTGAAGTTTGAAACTA 653
Query 600 AGTCGGGT 607
||| ||||
Sbjct 654 AGTTGGGT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5