BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949525

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   763    0.0  


> AT5G50090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G62900.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants 
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI 
BLink). | chr5:20369851-20371094 FORWARD LENGTH=806
Length=806

 Score =  763 bits (413),  Expect = 0.0
 Identities = 475/505 (94%), Gaps = 4/505 (1%)
 Strand=Plus/Plus

Query  18   AAGATGGGAAACTGTCAAGCAGTGGATACAGCGAGAGTAGTGATACAACACCCAAATGGG  77
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  108  AAGATGGGAAACTGTCAAGCAGTGGATACAGCGAGAGTGGTGATACAACACCCAAATGGG  167

Query  78   AAAGAAGAAAAGTTAAGTTGTCCAGTTTCTGCTAGTTATGTGATGAAGATGAATCCTGGT  137
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  168  AAAGAAGAAAAGTTAAGTTGTCCAGTTTCTGCAAGTTATGTGATGAAGATGAATCCTGGC  227

Query  138  CACTGTGTTTCTCTTCTTATCTCCACCACTGCTCTCTTGGCCACC-TCTTCCGGTCATGG  196
            |||||||||||||| || ||||| ||||| ||||||| | | | | ||||||||||||||
Sbjct  228  CACTGTGTTTCTCTCCTCATCTCTACCACCGCTCTCTCGTC-AGCATCTTCCGGTCATGG  286

Query  197  AGGCCCTCTTAGGCTCACAAGGATCAAGCTCCTTCGTCCAACGGATACGCTTGTTCTCGG  256
            ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  287  AGGGCCTCTTAGGCTCACGAGGATCAAGCTCCTTCGTCCCACGGATACGCTTGTTCTCGG  346

Query  257  CCACGTCTATAGACTCATTACCACTAAAGAGGTAATGAAGGGTTTAATGGCGAAAAAATG  316
            |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct  347  CCACGTCTATAGACTCATTACCACCAAAGAGGTTATGAAGGGTTTAATGGCCAAAAAATG  406

Query  317  TTCGAAGTTGAAGAAAGAAAGTAAATGG-TCGGAAGATAAGCTAGAGATGGTGAAAGCAA  375
            ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct  407  TTCGAAGTTGAAGAAAGAAAGTAAA-GGCTCGGATGATAAGCTAGAGATGGTGAAAGCAA  465

Query  376  TTAACTCTACTAAGCTTGACAATGAAGATCAGCTGCAAATGAAGAAGCAAGAGAAAGAAA  435
            | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  466  TAAACTCTACTAAGCTTGACAATGAAGATCAGCTGCAAATGAAGAAACAGGAGAAAGAAA  525

Query  436  GGTCAAGAATCTCAAGATCATGGCAGCCCTCTTTACAAAGCATTTCAGAAGGAGGGTCTA  495
            |||||||||||||||||||||||||||| || ||||||||||| || |||||||| || |
Sbjct  526  GGTCAAGAATCTCAAGATCATGGCAGCCATCATTACAAAGCATATCGGAAGGAGGATCAA  585

Query  496  GCTGAGCAAATTCTAAAACTTTGGG  520
            |||||||||||||||||||||||||
Sbjct  586  GCTGAGCAAATTCTAAAACTTTGGG  610



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5