BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949528
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfami... 412 1e-114
AT5G50111.1 | Symbols: | Pseudogene of AT5G50120; transducin f... 357 5e-98
> AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20382615-20383874 REVERSE LENGTH=1260
Length=1260
Score = 412 bits (223), Expect = 1e-114
Identities = 345/401 (86%), Gaps = 19/401 (5%)
Strand=Plus/Plus
Query 87 GGCTGATAAGCTCTTCCCAG--CACCAAGATCAAAAGATACATGTGTAGAAGAT-AACTA 143
||||||||| ||||| ||| ||||||||||| ||||||| ||||| |||||| ||| |
Sbjct 369 GGCTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGA 428
Query 144 CGTCGTTGAAGAAGAAGCGGGTGGTAAAAAGTACATGCATTTAGCTATGATGCCAAAGAT 203
||||||||||||||| | ||||||||||||||||||||||||||| | |||||||| |||
Sbjct 429 CGTCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGAT 488
Query 204 TAGTGACCGTTTAGCAAAGTCATTGATGCCTATA-AACCAAGTCGAAACAAGGAGGCACA 262
||| || ||||| ||||||| |||||||| | | |||||||| |||| ||||||||| |
Sbjct 489 TAGCGATCGTTTTGCAAAGTGTTTGATGCC-AAAGAACCAAGTTGAAATAAGGAGGCATA 547
Query 263 AAAAAGCTTCATGGGTTCACCATGTAGAAGCGGTTTCAGGTTTAGCCTTATCAAGAGATG 322
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 548 AGAAAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATG 607
Query 323 GAACACTCCTCTATTCTGAATCATGGGACCGGACGCTCAAACTCAAAATATGGCAAACCA 382
||||||| ||||| |||| ||||||||| ||||||| | ||||| |||| |||||
Sbjct 608 GAACACTACTCTACTCTGTCTCATGGGACAGGACGCT-----T-AAAATCTGGCGAACCA 661
Query 383 CCAATTTTAAATGCCTAGAGTCCAT-CACAAACTCCCACGATGATGTAATCAATGCGGTT 441
|| ||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||
Sbjct 662 CCGATTTTAAATGCCTAGAGTC-ATTCACAAACGCCCACGATGATGCAATCAATGCGGTT 720
Query 442 GAAGTATCCGAGAAT--TGATA-AGTATACATGGGATCTTC 479
| | ||||||| ||| ||||| | |||||| || ||||||
Sbjct 721 GCATTATCCGAAAATGGTGATATA-TATACA-GG-ATCTTC 758
> AT5G50111.1 | Symbols: | Pseudogene of AT5G50120; transducin
family protein / WD-40 repeat family protein | chr5:20376311-20376942
REVERSE LENGTH=632
Length=632
Score = 357 bits (193), Expect = 5e-98
Identities = 339/404 (84%), Gaps = 32/404 (8%)
Strand=Plus/Plus
Query 87 GGCTGATAAGCTCTTCCCA--GCACCAAGATCAAAAGATACATGTGTAGAAGAT--A--A 140
|||||| |||||||||||| ||||||||||||||||||| ||||| |||||| | |
Sbjct 207 GGCTGAGAAGCTCTTCCCAGCGCACCAAGATCAAAAGATATGTGTGTGGAAGATCAATGA 266
Query 141 C-TACGTCGTTGAAGAAGAAGCGGGTGGTAAAAAGTACATGCATTTAGCTATGATGCCAA 199
| | ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 267 CGT-CGTCGTTGAAGAAAAAGCGGGTGGTATAAAGTACATGCATTTGGCTATGATGCCAA 325
Query 200 AGATTAGTGACCGTTTAGCAAAGTCATTGATGCCTATAAACCAAGTCGAAACAAGGAGGC 259
|||||||||||||||||||||||| || |||||| |||| || | | | | |
Sbjct 326 AGATTAGTGACCGTTTAGCAAAGTGTTTAATGCCT-TAAA--AA--C----C-A--A-G- 371
Query 260 ACAAAAAAGCTTCATGGGTTCACCATGTAGAAGCGGTTTCAGGTTTAGCCTTATCAAGAG 319
| ||| ||||||| |||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 372 TC--AAAGGCTTCAT-TGTTCACCATGTAGACGCGGTTTCAGGTTAAGCCTTATCAAGTG 428
Query 320 ATGGAACACTCCTCTATTCTGAATCATGGGACCGGACGCTC-AAA---CTCAAAATATGG 375
||||||||||||||||||||| ||| | || ||| | || ||| ||||||||| |
Sbjct 429 ATGGAACACTCCTCTATTCTGTCTCACAGAACTGGATGTTCAAAATTGTTCAAAATATAG 488
Query 376 CAAACCACCAATTTTAAATGCCTAGAGTCCATCACAAACTCCCACGATGATGTAATCAAT 435
| ||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 489 CGAACTACCCATTTTAAATGCCTATAGTCCATCACAAACACCCACGATGATGTAATCAAT 548
Query 436 GCGGTTGAAGTATCCGAGAATTGATAAGTATACATGGGATCTTC 479
||||||||||||||| | | ||| |||| |||||||||||||||
Sbjct 549 GCGGTTGAAGTATCC-A-A-TTGGTAAGCATACATGGGATCTTC 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22806302738
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5