BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949533
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50150.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2137 0.0
AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 104 2e-21
> AT5G50150.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:20402257-20406731 REVERSE LENGTH=1806
Length=1806
Score = 2137 bits (1157), Expect = 0.0
Identities = 1257/1305 (96%), Gaps = 8/1305 (1%)
Strand=Plus/Plus
Query 1 AAGCCGTACATTCTCTAGTTATGGcttcttcttcttcttcattttcttcttcAACTACTT 60
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 337 AAGCCGTACATTCTCTAGTTATGG---CTTCTTCTTCTTC---TTCTTCTTCAACTACTT 390
Query 61 CAACCATCACATCCAAATTTATTGGGAttcttcttcttctctctcttcAAATAGACTTGT 120
|||||||||||||||||||||||||| || | |||||||||||||||||| ||||||| |
Sbjct 391 CAACCATCACATCCAAATTTATTGGGCTTATGCTTCTTCTCTCTCTTCAACTAGACTTAT 450
Query 121 TACTCGGATCAGCTATTCATCTTAAAAACCAAACTTCATTCAGACCCAACAGAGATATTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 451 TACTCGGATCAGCTATTCATCTTAAAAACCAAACTTCATTCAGACCCAACAGGGAGATTC 510
Query 181 AGAAGCTTAGAAGAGTGGAAGCATATCTCAACAGAATCAATAAACCTTCCATCAAAACAA 240
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 511 AGAAGCTTAGAAGAGTGGAAGCATATCTCAGCAAAATCAACAAACCTTCCATCAAAACAA 570
Query 241 TCCACAGCCCAGATGGAGATGTCATAGAATGTGTACCGTCTCATTTACAACCAGCATTTG 300
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 571 TCCACAGCCCAGACGGAGATGTAATAGAATGTGTACCGTCTCATTTACAACCCGCATTTG 630
Query 301 ATCATCCTCATCTACAAGGCCAGAAGCCACTGGATTCACCAGACAGGTCAAGTAGAA-GT 359
|||||||||| |||||||||||||| ||||| || ||||| ||||| |||||| || |
Sbjct 631 ATCATCCTCAGCTACAAGGCCAGAAACCACTTGACTCACCTTACAGGCCAAGTA-AAGGA 689
Query 360 AATGAAACAACAAATGAGGAAAGTTTTAATCAGTTATGGAGTATGTCCGGTGAAAGTTGT 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 AATGAAACAACATATGAGGAAAGTTTTAATCAGTTATGGAGTATGTCCGGTGAAAGTTGT 749
Query 420 CCAGTTGGGTCAATACCAATGAGAAAAACAACGAAGAATGATGTTTTGAGAGCAAATTCA 479
||| |||||||||||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 750 CCAATTGGGTCAATACCAATTAGAAAAACAACAAAGAATGATGTTTTAAGGGCAAATTCA 809
Query 480 GTTCGACGGTTTGGTCGGAAATTAAGAAGACCCATTAGACGAGATTCCTCCGGAGGTGGT 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 810 GTTCGACGGTTTGGTCGGAAATTAAGAAGACCCATTAGACGAGATTCATCCGGAGGTGGT 869
Query 540 CACGAGCATGCGGTGGTGTTTGTAAATGGAGAACAATACTATGGAGCAAAAGCAAGCATT 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 870 CACGAGCATGCGGTGGTGTTTGTAAATGGAGAACAATACTATGGAGCTAAAGCAAGCATT 929
Query 600 AACGTGTGGGCGCCACGTGTCACTGATGCTTATGAGTTTAGTTTATCTCAGATTTGGCTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AACGTGTGGGCGCCACGTGTCACTGATGCTTATGAGTTTAGTTTATCTCAGATTTGGCTC 989
Query 660 ATCTCTGGATCCTTTGGTCACGACCTAAACACCATTGAAGCTGGTTGGCAGGTTAGTCCT 719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 990 ATCTCTGGATCCTTTGGTCATGACCTAAACACCATTGAAGCTGGTTGGCAGGTTAGTCCT 1049
Query 720 GAGCTATATGGAGATAATTATCCAAGATTCTTCACATATTGGACGACTGATGCATACCAA 779
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GAACTATACGGAGATAATTATCCAAGATTCTTCACATATTGGACGACTGATGCATACCAA 1109
Query 780 GCAACTGGGTGCTACAATTTACTCTGCTCTGGATTCGTACAAACCAACAATAAAATTGCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GCAACTGGGTGCTACAATTTACTCTGCTCTGGATTCGTACAAACCAACAATAAAATTGCA 1169
Query 840 ATTGGTGCAGCGATTTCCCCGAGGTCCTCTTATAATGGAAGACAGTTTGATATCGGTTTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ATTGGTGCAGCGATTTCCCCGAGGTCCTCTTATAATGGAAGACAGTTTGATATCGGTTTA 1229
Query 900 ATGATTTGGAAGGATCCAAAACATGGGCACTGGTGGCTTGAACTAGGGAATGGACTTCTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 ATGATTTGGAAGGATCCAAAACATGGGCACTGGTGGCTTGAACTAGGGAATGGACTTCTT 1289
Query 960 GTGGGATACTGGCCAGCTTTCTTGTTCAGTCACTTGAGGAGTCATGCAAGTATGGTACAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 GTGGGATACTGGCCAGCTTTCTTGTTCAGTCACTTGAGGAGTCATGCAAGTATGGTACAA 1349
Query 1020 TTTGGCGGCGAAGTTGTGAACAGCCGATCAAGCGGTGCTCACACCGGAACACAGATGGGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTTGGCGGCGAAGTTGTGAACAGCCGATCAAGCGGTGCTCACACCGGAACACAGATGGGA 1409
Query 1080 AGCGGCCATTTCGCAGATGAAGGGTTTGAGAAAGCTGCCTACTTTAGGAATTTACAAGTT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 AGCGGCCATTTCGCAGATGAAGGGTTTGAGAAAGCTGCCTACTTTAGGAATTTACAAGTT 1469
Query 1140 GTTGATTGGGACAACAATCTCTTGCCTCTGAAGAATCTCCATGTCTTGGCTGATCACCCG 1199
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1470 GTTGACTGGGACAACAATCTCTTGCCTCTGAAGAATCTCCATGTCTTGGCCGATCACCCC 1529
Query 1200 GCTTGTTATGACATCAGACAAGGCAAAAACAATGTATGGGGGACTTATTTTTACTATGGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GCTTGTTATGACATCAGACAAGGCAAAAACAATGTATGGGGGACTTATTTTTACTATGGA 1589
Query 1260 GGCCCTGGTCGAAACCCTAGGTGTCCTTGACTCACCCGAACCGAA 1304
|| |||||||| ||||| ||||||||||||||||||| ||| |||
Sbjct 1590 GGGCCTGGTCGGAACCCAAGGTGTCCTTGACTCACCCAAACAGAA 1634
> AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18283803-18285837 FORWARD LENGTH=1359
Length=1359
Score = 104 bits (56), Expect = 2e-21
Identities = 118/146 (81%), Gaps = 12/146 (8%)
Strand=Plus/Plus
Query 684 CTAAACACCATTGAAGCTGGTTGGCAGGTT-AGTCCTGAGCTATATGGA-GATAATTATC 741
|||||||||||||||||||||||||||||| | ||| || ||||||| | |||||| |||
Sbjct 604 CTAAACACCATTGAAGCTGGTTGGCAGGTTTA-TCCAGAACTATATG-ATGATAATAATC 661
Query 742 CAAGATTCTTCACATATTGGACGAC-TGATGCATACC-AAGCAACTGGG-TGCTACAAT- 797
| |||||||| ||||||||| | ||||| |||| || ||| ||| ||||||||
Sbjct 662 CTAGATTCTTTGTTTATTGGACG-CGTGATGGGTACCGAAA-AAC-GGGATGCTACAACC 718
Query 798 TTACTCTGCTCTGGATTCGTACAAAC 823
|| |||||||| || || || |||||
Sbjct 719 TT-CTCTGCTCAGGTTTTGTTCAAAC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5