BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949546
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein ... 1280 0.0
> AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein
31B | chr5:20452487-20454013 REVERSE LENGTH=1108
Length=1108
Score = 1280 bits (693), Expect = 0.0
Identities = 850/925 (92%), Gaps = 13/925 (1%)
Strand=Plus/Plus
Query 1 AATCTCTCCAAAATCAG-AAAATGACTTCTTCAATACTAACCTCAAGCCTAAAGCTTTTA 59
||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 28 AATCTCTCCAAAATCAGAAAAATGACTTCTTCAGTACTAACCCCAAGCTTAAAGCTTTTA 87
Query 60 GCTGTTG-CGAATTCTTCTTCTTCGACCCTTTTCTGTCTTCCTTCTATCTCCACCATTTC 118
||| || |||||||||| |||||||||||||| ||| |||||||||||| || ||| ||
Sbjct 88 GCT-ATGACGAATTCTTCCTCTTCGACCCTTTTTTGTATTCCTTCTATCTTCAACATCTC 146
Query 119 TTCCTCCAAACCTCACCACTTCAATTTTTCCTT-CCCTCCAAGACCCATTAATCTCCCAC 177
||||| || |||||| ||||||||||||||| ||| || ||||| |||||||| |||
Sbjct 147 GTCCTCTGAATCTCACCGCTTCAATTTTTCCTTATCCT-CACGACCCGTTAATCTCACAC 205
Query 178 TCTCTCTCAAATCCAAAACTCTCCGTAACTCATCTCCTGTTGTTACTTTTGTTTCCCAAA 237
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 206 TCTCTCTCAAATCCAAAACTCTTCGTAACTCATCTCCTGTTGTTACTTTCGTTTCCCAAA 265
Query 238 CTTCGGATTGGCCTGAGGAAGAAGAAGGTGAGGATGGAAGCATCGGAGGTACTTCCGTCA 297
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 266 CTTCGAATTGGGCTGAGGAAGAAGAAGGTGAGGATGGAAGCATCGGAGGTACTTCAGTCA 325
Query 298 CTGTAGATGAGAATTTCGAGTCTGATGACGGTGGTGAATTCCAGAAGCCACCGGAAGAGG 357
|||||||||||| |||||||||||| ||||||| || ||||| | |||||||||||||||
Sbjct 326 CTGTAGATGAGAGTTTCGAGTCTGAAGACGGTGTTGGATTCCCGGAGCCACCGGAAGAGG 385
Query 358 CTAAATTGTTCGTCGGAAACTTGCCGTACGATGTTGATAGTCAAGCTTTAGCTATGCTCT 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CTAAATTATTCGTCGGAAACTTGCCGTACGATGTTGATAGTCAAGCTTTAGCTATGCTCT 445
Query 418 TTGAGCAAGCTGGTACTGTTGAGATTTCAGAGGTTATATACAATAGGGACACTGATCAAA 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TTGAACAAGCTGGTACTGTTGAGATTTCAGAGGTTATATACAATAGGGACACTGATCAAA 505
Query 478 GTCGTGGATTTGGGTTTGTAACAATGAGTACAGTTGAAGAAGCAAAGAAAGCTGTTGAGA 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 506 GTCGTGGATTTGGGTTTGTAACAATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGA 565
Query 538 AGTTCAATCGTTATGAAGTGAATGGGAGGC-TTCTGACAGTGAACATAGCAGCACCTAGA 596
|||||||| ||| ||||||||||||||||| || ||||||| |||| |||||| || |||
Sbjct 566 AGTTCAATAGTTTTGAAGTGAATGGGAGGCGTT-TGACAGTAAACAGAGCAGCTCCAAGA 624
Query 597 GGATCAAGACCGGAAAGACAACCTCGTCAATATGATGCTGCGTTTAGGATCTATGTTGGG 656
||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 625 GGATCAAGACCTGAACGACAACCTCGTGTATATGATGCTGCGTTTAGGATCTATGTTGGG 684
Query 657 AATCTGCCATGGGATGTGGATAATGATCGTTTACAACAGGTG-TTTAGCGAGCATGGGAA 715
|| ||||||||||||||||||| || |||||| ||| | | |||||||||||||||||
Sbjct 685 AACCTGCCATGGGATGTGGATAGTGGTCGTTTGGAAC-GATTATTTAGCGAGCATGGGAA 743
Query 716 AGTAGTTGATGCTAGAGTGGTTTAC-GATAGAGAGACAGGTCGTTCACGCGGGTTTGGGT 774
|||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 744 AGTAGTTGATGCCCGAGTGGTTT-CTGATAGAGAGACAGGTCGTTCACGTGGGTTTGGGT 802
Query 775 TTGTTACAA-TGTCGAATGAGAATGAAGTTAACGACGCTATTGCTGCTCTTGATGGACAG 833
||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 803 TTGTT-CAAATGTCGAATGAGAATGAAGTTAACGTTGCCATTGCTGCTCTTGATGGACAG 861
Query 834 AATTTGGAAGGCAGAGCAATTAAAGTGAACGTGGCCGAGCAACGACCAAGGCGTGGATTT 893
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 862 AATTTGGAAGGCAGAGCAATTAAAGTGAACGTGGCTGAGGAACGAACAAGGCGTTGATTT 921
Query 894 TGATAGCTCAATGAGTGTTAGTATT 918
|||||||||| ||||||||| ||||
Sbjct 922 TGATAGCTCAGTGAGTGTTAATATT 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5