BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949547
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80930.1 | Symbols: | MIF4G domain-containing protein / MA3... 1615 0.0
> AT1G80930.1 | Symbols: | MIF4G domain-containing protein / MA3
domain-containing protein | chr1:30405432-30409710 REVERSE
LENGTH=3256
Length=3256
Score = 1615 bits (874), Expect = 0.0
Identities = 1343/1569 (86%), Gaps = 34/1569 (2%)
Strand=Plus/Plus
Query 207 TTGGGAAAACCTA-GTGGAGTTTATATTCCTCCGTTCAAGCTAGCAAGCATGTTGAATGA 265
||||||||| | | | |||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1187 TTGGGAAAAAC-AGGAGGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGA 1245
Query 266 TGAGAAAGATAAGAGCAGCGTAGAGTATCAACGTCTTACATGGGATGCTTTTCGTAAAAG 325
| | ||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 1246 GGTGGAAGATAAAAGCAGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAG 1305
Query 326 TATTAACGGGCTCGTTAACAAGGTTAACGCAAACAACATCAAGAACATAATCCCTGAACT 385
|||||| |||||||| || |||||||| |||| |||||||||||||||||||||||||||
Sbjct 1306 TATTAATGGGCTCGTCAATAAGGTTAATGCAAGCAACATCAAGAACATAATCCCTGAACT 1365
Query 386 GTTTGCTGAAAATCTCATCAGAGGAAGAGGACTTTTTTGTCGTGCTTGTATCAAGTCTCA 445
||||||||||||||||||||||||||| |||||||| || ||| | ||||| ||||||||
Sbjct 1366 GTTTGCTGAAAATCTCATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAGTCTCA 1425
Query 446 AATGGAATCACCTGGATTCACTGACGTTTTTGCAGCGTTAGTCGCGGTTATCAACTCTAA 505
||||| ||| ||||||||||||||||| |||||||| |||||||| ||||| ||| | ||
Sbjct 1426 AATGGCATCTCCTGGATTCACTGACGTCTTTGCAGCTTTAGTCGCTGTTATTAACGCCAA 1485
Query 506 ATTCCCTCAAGTTGCTCTGCTTTTAGTGAAAAGAGTTGTTTTG-ATACTAAAGAGAGCTT 564
||||||| |||||||| ||| || ||||||| || |||||| | ||||||||||| |
Sbjct 1486 ATTCCCTGAAGTTGCTGAACTTCTATTGAAAAGGGTCGTTTTGCAG-CTAAAGAGAGCGT 1544
Query 565 ATATGCGTAACGATAAGCCTCAGTTTCTTGCTGCTGTTAAATTCGTAGCGCATTTAGTAA 624
||| ||||||||| |||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct 1545 ATAAGCGTAACGACAAGCCTCAATTGCTTGCTGCTGTAAAATTTATAGCGCATCTAGTAA 1604
Query 625 ACCAGCAAGTCGCTGATGAGATCATTGCTTTTGAATTACTCACTGTGCTTTTGGAAAACC 684
|||||||||||||||| |||||||| || |||| ||| | || | ||| ||| | |||
Sbjct 1605 ACCAGCAAGTCGCTGAGGAGATCATAGCACTTGAGTTAGTTACCATACTTCTGGGAGACC 1664
Query 685 CGACTGATGCCAGAGTAGAGATGGCTGTTGCGTTTGTGATTGAGTGTGGCGCGTTGCTGC 744
| ||||||| ||| || ||| ||||||||| |||||||| || ||||| || |||| |
Sbjct 1665 CAACTGATGACAGTGTTGAGGTGGCTGTTGGGTTTGTGACGGAATGTGGTGCAATGCTTC 1724
Query 745 AAGACGTTGCACCAAAAGGATT-ACATGGGATTTTTGAGCGGTTTCGCGGTATATTGCAT 803
|||||||| |||||| |||||| | |||||||||||||| ||||||| |||||| ||||
Sbjct 1725 AAGACGTTTCACCAAGAGGATTGA-ATGGGATTTTTGAGAGGTTTCGTGGTATACTGCAC 1783
Query 804 GAAGGAGAGATAGATAAGAGAACTCAGTACTTGATTGAACGTCTCTTTGCTATTGGGAGA 863
|| |||||||||||||||||| |||||| ||||||||| |||||||||||| | ||| |
Sbjct 1784 GAGGGAGAGATAGATAAGAGAGTTCAGTATTTGATTGAAAGTCTCTTTGCTACTAGGA-A 1842
Query 864 G-CGAAATTTCAGGGATATCCCGCGGTTCG-CGCTGAGCTTGATCTCGTGGAAGAAAAGT 921
| |||||||||||||| |||| || ||||| | ||||||| ||||| || |||||||| |
Sbjct 1843 GGCGAAATTTCAGGGACATCCGGCCGTTCGTC-CTGAGCTAGATCTTGTTGAAGAAAAAT 1901
Query 922 ACTCACATGATGTCTCTCTTGATGAGGAAATTGATCCTGAAACTGCTCTTGATGTTTTCA 981
| || |||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 1902 ATTCGCATGATCTCTCTCTTGATCATGAAATTGATCCTGAAACTGCTCTTGATATTTTCA 1961
Query 982 AACTTGATCCTGACTTCGTAGACAAGGAACAGAAATACGAGGCGCTGAAGAAAGAGTTAC 1041
||| ||||||||| ||||| || || ||| ||||||| ||||||||||||||||||||||
Sbjct 1962 AACCTGATCCTGATTTCGTGGAGAACGAAAAGAAATATGAGGCGCTGAAGAAAGAGTTAC 2021
Query 1042 TTGGTGAGGAGGAATCCGAGGATGAAGATGGCGGC-G--GCT-GT---GATGCTA--GTT 1092
| ||||| || || || ||||||||||||||| | | ||| || || | || | |
Sbjct 2022 TCGGTGACGAAGAGTCTGAGGATGAAGATGGCT-CTGATGCTAGTTCAGAGGATAACGAT 2080
Query 1093 CAG-AGGAT-A--A--C-GATGCGGA-G--GAAGAAGAAATGAGAATAAGCGATGAGACA 1142
|| |||| | | | |||| || | |||||| ||||||||||||| || || |||
Sbjct 2081 GAGGAGGAAGATGAGTCTGATGAAGAAGATGAAGAACAAATGAGAATAAGAGACGAAACA 2140
Query 1143 GCGACTAATCTTGTTAATCTTAGGAGGACAATTTACCTAACCATTATGTCCACCGTAGAT 1202
| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||| || |||
Sbjct 2141 GAGACTAATCTTGTTAATCTTAGAAGGACAATCTACCTGACCATAATGTCCAGTGTTGAT 2200
Query 1203 TTCGAGGAAGCAGGTCACAAGTTACCTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAA 1262
|| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2201 TTTGAAGAAGCAGGTCACAAATTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAA 2260
Query 1263 CTATGCATAATGCTCTTGGAATGTTGCTCTCAAGAGAAAACTTATCTTCCTTACTACGGT 1322
||||||||||||||| |||||||||||||||| |||| ||| ||||| | |||||| ||
Sbjct 2261 CTATGCATAATGCTCCTGGAATGTTGCTCTCAGGAGAGAACATATCTGCGTTACTATGGA 2320
Query 1323 TTGTTGGGTCAGCGTTTCTGTATGCTCAA-AAAGATCCATCAAGCGAATTTCGAGAAATG 1381
|||||||||||||||||||||||| |||| ||| || ||||||| |||||| ||||||||
Sbjct 2321 TTGTTGGGTCAGCGTTTCTGTATGATCAACAAA-ATTCATCAAGAGAATTTTGAGAAATG 2379
Query 1382 CTTTGTTCAACAGTATTCAATGAGTCACCGTCTTGAGACAACCAAGTTGCATAACGTTGC 1441
||||||||| |||||||| |||| ||||||||||||||||| ||| |||| |||||| ||
Sbjct 2380 CTTTGTTCAGCAGTATTCCATGATTCACCGTCTTGAGACAAACAAATTGCGTAACGTGGC 2439
Query 1442 TACGTTTTTTGCTCATTTACTTTGCAGAGATGCTCTCCCTTGGCATGTTCTTGGCTACAT 1501
|| ||||||||| |||||||| ||| |||||||||||| |||||||| |||| ||||||
Sbjct 2440 TAAGTTTTTTGCCCATTTACTGGGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACAT 2499
Query 1502 TCGGTTAACGGAAGACTACACAACTTCCTCGTCGCGTATCTTCGTTAAGATCCTTTTCTT 1561
||| ||||| || || |||| |||||||| || ||||||||| |||||||||| |||
Sbjct 2500 TCGATTAACCGAGGAAGACACTACTTCCTCATCTCGTATCTTCATTAAGATCCTATTCCA 2559
Query 1562 GAAATTGTCAGATGACTTGGGGATTAAGATACTTAATGAGAGGCTTCAGGATCCAACAAT 1621
| |||||||||| |||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2560 GGAATTGTCAGAACACTTGGGGATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAAT 2619
Query 1622 GGAGGAGTCACTTGAATCTATCTTCCCTAAAGATAATCCAAAGAACACTAGATTTGCAAT 1681
| |||| |||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 2620 GCAGGAATCACTTGAATCTATATTCCCTAAGGATAATCCAAAGAACACGAGGTTTGCAAT 2679
Query 1682 CAACTTCTTTAC-TGCTATTGGTCTTGGAGGCATTACAGAGAATCTTAGAGAGTATTTGA 1740
|||||||||||| | | ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 2680 CAACTTCTTTACGTCC-ATTGGTCTTGGAGGCATCACAGAGAATCTGAGAGAGTATCTGA 2738
Query 1741 AGAACATGC 1749
|||||||||
Sbjct 2739 AGAACATGC 2747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91967398440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5