BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949548

Length=1192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17560.1 | Symbols:  | F-box and associated interaction doma...   259    4e-68


> AT3G17560.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:6006762-6008003 FORWARD LENGTH=1242
Length=1242

 Score =  259 bits (140),  Expect = 4e-68
 Identities = 297/367 (81%), Gaps = 33/367 (9%)
 Strand=Plus/Plus

Query  809   TACTATGGCTCTATCGGTTGTTAGAGAAGAACATCTTTCGTTGTTATTTCAGAGCGGAGT  868
             |||||||||||| || ||||||||||||||||||||||||||||||| ||||||  | | 
Sbjct  888   TACTATGGCTCTCTCAGTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGCGA  947

Query  869   GACACAAAAGATGGAAATATGGATAACCACTGAGATTGAGACCACATCTGTGTCATGGAA  928
             ||| | |||| ||||||||||||| ||||  |||||||| || |||| ||||||||||||
Sbjct  948   GACTCTAAAGGTGGAAATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAA  1007

Query  929   CAAGTTCTTAACAGTGGATTTTGAACCTCATC--CC-CAT------ATGTTTTCGCGTGG  979
              |||||||||||||||||||| ||||||||||  || |||      ||||||||| || |
Sbjct  1008  AAAGTTCTTAACAGTGGATTTAGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCG  1067

Query  980   CATGAGTTTTTTCATTGACGAGGAGAAGAAAGTTGCCGTTTGTTGTGAGAAAGTCCAAGA  1039
             ||||||||| ||||| ||||||||||||||||||||||| ||||||||      | | ||
Sbjct  1068  CATGAGTTTCTTCATCGACGAGGAGAAGAAAGTTGCCGTGTGTTGTGA------C-A-GA  1119

Query  1040  GAATAATATATTCAACAAGGTATACATTGTTGGAGAAGATGAATACAAAGTATCTCCGGG  1099
             || |||      |||   |||| || ||||||||||||||||||||| ||||||| | ||
Sbjct  1120  GA-TAA------CAA---GGTACACGTTGTTGGAGAAGATGAATACAGAGTATCTTCTGG  1169

Query  1100  TTTTGGTTTTC-ATGAGTATAGA-GGCATAT-ATAGTTGCCCAACTATGTTTGGTTATGT  1156
             ||||  ||||| | || | | || ||||||  || ||||||  ||| | |||||||||||
Sbjct  1170  TTTTTATTTTCTA-GATTTT-GAAGGCATAACAT-GTTGCCTGACTGTCTTTGGTTATGT  1226

Query  1157  TCCAAGA  1163
             |||||||
Sbjct  1227  TCCAAGA  1233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58533835470


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5