BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949550
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03170.1 | Symbols: | AP2/B3-like transcriptional factor fa... 767 0.0
AT1G20600.1 | Symbols: | AP2/B3-like transcriptional factor fa... 743 0.0
> AT4G03170.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:1400832-1401584 FORWARD LENGTH=753
Length=753
Score = 767 bits (415), Expect = 0.0
Identities = 577/652 (88%), Gaps = 23/652 (4%)
Strand=Plus/Plus
Query 147 gatacagatgatgaagaggatatagat---ga--tga-agatgat-acaga-tgatgaGG 198
|||| |||||||||||| ||||||||| || | | ||||||| | ||| | ||||||
Sbjct 112 GATATAGATGATGAAGACGATATAGATGACGAGGTTATAGATGATGA-AGACT-ATGAGG 169
Query 199 TTGCGTCCAC-TCCATTATTACAAGTAAGCCAAGCTCATCAAAAGAAGTCTAGGAAGAGG 257
|||||||| | |||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct 170 TTGCGTCC-CTTCCATTATTACAAGAAAGCCAAGCTAATCAAAAGCAGTCTAGGGAGAGG 228
Query 258 GAAGAAAAAGTATCTGACAAAAATCAACCTAAGAGGGTTAAGAAACAGAGCATCATGAAA 317
|||||| || | |||| |||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 229 GAAGAAGAA--A-CTGAAAAAAATCAACCTAAGAGGTTTAAGAAACAGAACATGATGAAA 285
Query 318 ATAAATATCAAAGACTTTTCAGAAGAGACTCGGAGGTCAATTGAGGTATGGTACAAAGCT 377
||||||||| | |||||||||||||| |||| ||||| |||||||||||||||| |||||
Sbjct 286 ATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGTATGGTACGAAGCT 345
Query 378 GAAATTGATCCACAGGAAATATTCGGCGATAATGAGGTGACGAGGCAATTCAGCAAACCG 437
||| | |||||||| || |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 346 GAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAGGCTATTCAGCAGACCG 405
Query 438 ATAAAGAAGCAGTTGATGTCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCT 497
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 406 ATAAAGAAGCAGTTGATGTCGAGCGATGTCGATAAAGATCAATGCATGCTCATGTTATCG 465
Query 498 AAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGAATCCGGTAAAG 557
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 AAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGATTCAGAGAATCCGGTAAAG 525
Query 558 GGGGTTGATGTTTCGGTGTATGGACCAGACGGAAAAGTTCAACAGATGAAGTTCAAGTTC 617
||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 526 GGGATTGATGTTTCGGTGTATGGACCAGACGGGAAAGTTCAACAGATGGAGTTCAAGATG 585
Query 618 TGGAATGGGGATAAAACACCTGTATTAACTAC-GGGATGGAAGGAGTTTGTTGCAA-AAT 675
||||||||||||||||||||||| |||||| | ||| |||||| |||||| || || | |
Sbjct 586 TGGAATGGGGATAAAACACCTGTGTTAACTTCAGGG-TGGAAGCAGTTTG-TGGAAGATT 643
Query 676 GTGGTC-TTCTAATGACTTCCGATTTTGTCACTGTTTGGATGTTTAGGCACATAGAGACT 734
||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 644 ATGGTCTTTC-GATGACTTGTGATTTTGTCACTGTTTGGATGTTTAGGCACATAAAGACT 702
Query 735 CGGAATATTTGCTTTGCTATTCACCGCGCTAGATTTCCTTTAA-AGAATTAA 785
|| || ||||||||||||||||| || || |||| |||||| ||| ||||
Sbjct 703 CGAAAGCTTTGCTTTGCTATTCACTACGTTAAATTTTCTTTAAGAGA-TTAA 753
> AT1G20600.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr1:7133111-7134416 FORWARD LENGTH=893
Length=893
Score = 743 bits (402), Expect = 0.0
Identities = 506/555 (91%), Gaps = 11/555 (2%)
Strand=Plus/Plus
Query 158 tgaagaggatatagatgatgaagatgatacagatgatgaGGTTGCGTCCAC-TCCATTAT 216
|||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTCC-CTTCCATTAT 154
Query 217 TACAAGTAAGCCAAGCTCATCAAAAGAAGTCTAGGAAGAGGGAAGAAAAAGTATCTGACA 276
||| ||||||||||||| |||||||| ||||||||||||||||||||||| | |||| |
Sbjct 155 TACTAGTAAGCCAAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGAAAAA--A-CTGAAA 211
Query 277 AAAATCAACCTAAGAGGGTTAAGAAACAGAGCATCATGAAAATAAATATCAAAGACTTTT 336
||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||||
Sbjct 212 AAAATCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTT 271
Query 337 CAGAAGAGACTCGGAGGTCAATTGAGGTA-TGGTACAAAGCTGAAATTGATCCACAGGAA 395
||||||| |||| ||||| |||||||| | |||||||| |||||| | |||||||||||
Sbjct 272 CAGAAGAAACTCTGAGGTTAATTGAGG-ATTGGTACAACGCTGAACTCGATCCACAGGAT 330
Query 396 ATATTCGGCGATAATGAGGTGACGAGGCAATTCAGCAAACCGATAAAGAAGCAGTTGATG 455
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 331 ATATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATG 390
Query 456 TCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCTAAGGAGCAAGTGAAGGAG 515
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 391 TCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAG 450
Query 516 AAGATGCTTCCTTTTCTAGAAGAATCAGAGAATCCGGTAAAGGGGGTTGATGTTTCGGTG 575
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 451 AAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTG 510
Query 576 TATGGACCAGACGGAAAAGTTCAACAGATGAAGTTCAAGTTCTGGAATGGGGATAAAACA 635
|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 511 TATGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACA 570
Query 636 CCTGTATTAACTAC-GGGATGGAAGGAGTTTGTTGCAAAATGTGGTCTTCT-AATGACTT 693
||||| |||||| | ||| |||| | ||||||| ||| | | ||||||| | || |||||
Sbjct 571 CCTGTCTTAACTTCAGGG-TGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAA-GACTT 628
Query 694 CCGATTTTGTCACTG 708
| |||||||||||||
Sbjct 629 CTGATTTTGTCACTG 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5