BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949551
Length=2212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)... 3136 0.0
> AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:20459238-20461504 FORWARD LENGTH=2172
Length=2172
Score = 3136 bits (1698), Expect = 0.0
Identities = 2032/2190 (93%), Gaps = 36/2190 (2%)
Strand=Plus/Plus
Query 21 ATGTCCATAGCGTCGTCTTCTTCTCTTGCGACCCAATCCTTTTATACTTCATTTCCTTTA 80
|||||||| | | |||||||||||||||||||||||||||||| | |||| |||||| ||
Sbjct 1 ATGTCCAT-G-G-CGTCTTCTTCTCTTGCGACCCAATCCTTTTTTTCTTCCTTTCCTCTA 57
Query 81 TCTCACCGACATCACCTCCCTGAACCTTATCTTCTTCTTCGCTCTTCACTT-TATCGAAA 139
|||||||||| |||| |||||| |||||||||||||||||| ||||| || | ||||||
Sbjct 58 TCTCACCGACTTCACTTCCCTGTACCTTATCTTCTTCTTCGTTCTTC-TTTCTTTCGAAA 116
Query 140 ACCCAttctttgtctctctgctacttcttccccttcgtcatcttcttc-t-t-cttccat 196
| ||| ||| |||||||||||| |||||||||||||||||||||| | | |||||||
Sbjct 117 A-CCA--CTTAGTCTCTCTGCTA---CTTCCCCTTCGTCATCTTCTTCTTCTCCTTCCAT 170
Query 197 tttcctctcctgcttcGATGACCCTTTACCAGGTAAGATTCAACAACCAGAAATTTCGAC 256
|||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||
Sbjct 171 TTTCCTCTCCTGCTTCGATGACGCTTTGCCAGATAAGATCCAACAACCAGAAAATTCGAC 230
Query 257 AAAT-ATTAACCAA-Aaa--g-a--tgaagatgaagaagaagaagaagGAGATGATTTCA 309
||| | || | || ||| | | |||||| ||||| || |||||||||||||||||||
Sbjct 231 -AATCAATAGCGAAGAAAGTGAATGTGAAGAAGAAGATGATGAAGAAGGAGATGATTTCA 289
Query 310 CAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCGGAATTGAC-CCAAGAC 368
||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 290 CAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCAGAATCAACTGC-AGAC 348
Query 369 CCAGGTCGAGAATCCAAATTCTCCCTCCAGAAGAGTCGTCGAACCTCTTGGCACTTGGCT 428
|||| ||||||||||||||||||||||||||||| ||||||||| || ||||| || |||
Sbjct 349 CCAGCTCGAGAATCCAAATTCTCCCTCCAGAAGAATCGTCGAACTTCCTGGCATTTAGCT 408
Query 429 TCAGACTTCGCTGACCCCGGAACTGAGATTGAGTCCGAGCCTGAGGAATCCGTCTCTGTG 488
|||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||
Sbjct 409 CCAGACTTCGCTGACCCCGAAACTGAAATCGAGTCTAAGCCTGAGGAATCCGTCTTTGTG 468
Query 489 GCAAATCAACAAACACTTGGTGTGCACACTT-CTTTCGAAAGTAGCATCGCTGGGGAAAT 547
|||| |||||||||||||||||||| | || | ||||||||| || ||||| |||||||
Sbjct 469 ACAAACCAACAAACACTTGGTGTGCATA-TTCCATTCGAAAGTGGCGTCGCTAGGGAAAT 527
Query 548 ACTT-GAAATTGCTAAGAGTCTT-ACAGAGAATCAAACTCTGGGAGAGATGTTATCAGGT 605
||| ||| ||||||||| | || | ||||||||||||| ||||||||||||||||||||
Sbjct 528 -CTTGGAACTTGCTAAGAAT-TTGAAAGAGAATCAAACTTTGGGAGAGATGTTATCAGGT 585
Query 606 TTCGACAGAAGGGTTAGCGAAACAGAGTGTGTAGAGGCATTGGTGATGATGGGTGAATTT 665
||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| |
Sbjct 586 TTCGAAAGAAGGGTTAGTGATACAGAGTGTGTAGAGGCATTAGTGATGATGGGTGAATCT 645
Query 666 GGTTTTGTAAAGACTTGTTTGTATTTCTATGAGTGGATGAGTTTGCAAGAACCTTCCCTT 725
|||||||| |||| |||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 646 GGTTTTGTGAAGAGTTGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTT 705
Query 726 GCTTCGCCTCGTGCTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGAT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GCTTCGCCTCGTGCTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGAT 765
Query 786 TATATTCTGCTTCTGCTAAGTAATTTACCAGACAAGGAAGAGTTCAGAGATGTTCGTCTC 845
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 766 TACATTCTGCTTCTGCTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGTTCGTCTC 825
Query 846 TATAATGCCGCCATTTCTGGGT-TATCAGCTTCTCAAAGGTATGATGATGCTTGGGAAGT 904
|| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 826 TACAATGCCGCCATTTCT-GGTCTCTCAGCTTCTCAAAGGTATGATGATGCTTGGGAAGT 884
Query 905 GTATGAAGCTATGAATAAGATCAATGTGTTTCCGGATAATGTTACATGTGCTATTA-TGA 963
||||||||||||| ||||||||||||||| |||||| |||||||||||||||| || |||
Sbjct 885 GTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAATGTTACATGTGCTA-TATTGA 943
Query 964 TAACAACCATGAGGAAGGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGA 1023
| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGA 1003
Query 1024 TGAGCGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTAGCCTTGTGAAATCGTTTT 1083
|||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1004 TGAGTGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTGGCCTTGTGAAGTCGTTTT 1063
Query 1084 GTGACGAAGGG-TTGAAAGAAGAAGCTCTTGTAATTCAAACAGAGATGGAGAAGAAAGGT 1142
|||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1064 GTGATGAAGGGCTT-AAAGAAGAAGCTCTTGTGATTCAAACAGAGATGGAGAAGAAAGGT 1122
Query 1143 ATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTATAATAAATCCAACCAC 1202
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1123 ATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTACAACAAATCCAACCAC 1182
Query 1203 ATAGAAGAAGTGGAAGGTCTTTTTGCTGAAATGAAAGCTAAAGGCTTGAAGCCTACAGCT 1262
|||||||||||||||||||||||| ||||||||| || |||||||||||||||| | |||
Sbjct 1183 ATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAAGGCTTGAAGCCTTCGGCT 1242
Query 1263 GCGACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATTGTAGAG 1322
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1243 GCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATCGTTGAG 1302
Query 1323 ACATTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGT 1382
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 ACACTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGT 1362
Query 1383 TTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTG 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 TTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTG 1422
Query 1443 CGGATGAAAAAAGTAGGTTTGAAACCTTCTTCACATTCTTATACAGCTCTTATTCATGCT 1502
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1423 CGGATGAAGAAAGTAGGTTTGAAACCTTCTTCACATTCTTACACAGCTCTTATTCATGCT 1482
Query 1503 TACTCGGTTAGTGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGGATGGAG 1562
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1483 TACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGTAAGGAG 1542
Query 1563 GGGATCAAACCATCGGTTGAAACATACACATCACTTCTCGATGCATTCAGACGATCTGGT 1622
||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 1543 GGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGATGCATTCAGACGATCAGGC 1602
Query 1623 GACACTGAAAAGCTGATGGAAATTTGGAAACTAATGTTGAGAGAAAAAATCAAAGGGACA 1682
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1603 GACACTGGAAAGCTGATGGAAATTTGGAAACTAATGCTGAGAGAAAAAATCAAAGGGACA 1662
Query 1683 CGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCA 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 CGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCA 1722
Query 1743 AGGGATGTTGTTTCTGAGTTTGGTAAAATGGGTTTGCAGCCAAGTGTTATGACTTACAAT 1802
||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1723 AGGGATGTTGTATCTGAGTTTAGTAAAATGGGTTTGCAGCCGAGTGTCATGACTTACAAT 1782
Query 1803 ATGCTGATGAATGCCTACGCACGGGGAGGACAAGATGCGAAATTGCCACAGCTGTTGAAG 1862
|||||||||||||| ||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 1783 ATGCTGATGAATGCATACGCACGGGGAGGACAAGATGCAAAACTGCCGCAACTGTTGAAG 1842
Query 1863 GAAATGGCTGCTCTTAACATAAAACCTGATTCCATCACATATTCAACCATGATCTACGCG 1922
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1843 GAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATATTCAACAATGATCTACGCG 1902
Query 1923 TTTGTTCGTGTTAGAGACTTCAAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGC 1982
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 TTTGTTCGTGTTCGAGACTTCAAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGC 1962
Query 1983 GGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAAACAAGGTA 2042
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1963 GGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAGACAAGGCA 2022
Query 2043 AAGACACAGAACAGAAAGGATAAGACTGCCATTCTTGGTATAATTAATAGCAAATTCGGT 2102
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2023 AAGACAAAGAACAGAAAGGATAAGACTGCCATACTTGGTATAATTAATAGCAAATTCGGT 2082
Query 2103 AGGGTTAAGGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGAAGAGCCGA 2162
||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2083 CGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGACGAATCGA 2142
Query 2163 ACTACTTCTCCTGATCGTCACCGATCTTGA 2192
||||||||||||| ||||||||||||||||
Sbjct 2143 ACTACTTCTCCTGGTCGTCACCGATCTTGA 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109738391370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5