BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949551 Length=2212 Score E Sequences producing significant alignments: (Bits) Value AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)... 3136 0.0 > AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:20459238-20461504 FORWARD LENGTH=2172 Length=2172 Score = 3136 bits (1698), Expect = 0.0 Identities = 2032/2190 (93%), Gaps = 36/2190 (2%) Strand=Plus/Plus Query 21 ATGTCCATAGCGTCGTCTTCTTCTCTTGCGACCCAATCCTTTTATACTTCATTTCCTTTA 80 |||||||| | | |||||||||||||||||||||||||||||| | |||| |||||| || Sbjct 1 ATGTCCAT-G-G-CGTCTTCTTCTCTTGCGACCCAATCCTTTTTTTCTTCCTTTCCTCTA 57 Query 81 TCTCACCGACATCACCTCCCTGAACCTTATCTTCTTCTTCGCTCTTCACTT-TATCGAAA 139 |||||||||| |||| |||||| |||||||||||||||||| ||||| || | |||||| Sbjct 58 TCTCACCGACTTCACTTCCCTGTACCTTATCTTCTTCTTCGTTCTTC-TTTCTTTCGAAA 116 Query 140 ACCCAttctttgtctctctgctacttcttccccttcgtcatcttcttc-t-t-cttccat 196 | ||| ||| |||||||||||| |||||||||||||||||||||| | | ||||||| Sbjct 117 A-CCA--CTTAGTCTCTCTGCTA---CTTCCCCTTCGTCATCTTCTTCTTCTCCTTCCAT 170 Query 197 tttcctctcctgcttcGATGACCCTTTACCAGGTAAGATTCAACAACCAGAAATTTCGAC 256 |||||||||||||||||||||| |||| |||| |||||| ||||||||||||| |||||| Sbjct 171 TTTCCTCTCCTGCTTCGATGACGCTTTGCCAGATAAGATCCAACAACCAGAAAATTCGAC 230 Query 257 AAAT-ATTAACCAA-Aaa--g-a--tgaagatgaagaagaagaagaagGAGATGATTTCA 309 ||| | || | || ||| | | |||||| ||||| || ||||||||||||||||||| Sbjct 231 -AATCAATAGCGAAGAAAGTGAATGTGAAGAAGAAGATGATGAAGAAGGAGATGATTTCA 289 Query 310 CAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCGGAATTGAC-CCAAGAC 368 ||||||||||||||||||||||||||||||||||||||||||| |||| || | |||| Sbjct 290 CAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCAGAATCAACTGC-AGAC 348 Query 369 CCAGGTCGAGAATCCAAATTCTCCCTCCAGAAGAGTCGTCGAACCTCTTGGCACTTGGCT 428 |||| ||||||||||||||||||||||||||||| ||||||||| || ||||| || ||| Sbjct 349 CCAGCTCGAGAATCCAAATTCTCCCTCCAGAAGAATCGTCGAACTTCCTGGCATTTAGCT 408 Query 429 TCAGACTTCGCTGACCCCGGAACTGAGATTGAGTCCGAGCCTGAGGAATCCGTCTCTGTG 488 |||||||||||||||||| |||||| || ||||| |||||||||||||||||| |||| Sbjct 409 CCAGACTTCGCTGACCCCGAAACTGAAATCGAGTCTAAGCCTGAGGAATCCGTCTTTGTG 468 Query 489 GCAAATCAACAAACACTTGGTGTGCACACTT-CTTTCGAAAGTAGCATCGCTGGGGAAAT 547 |||| |||||||||||||||||||| | || | ||||||||| || ||||| ||||||| Sbjct 469 ACAAACCAACAAACACTTGGTGTGCATA-TTCCATTCGAAAGTGGCGTCGCTAGGGAAAT 527 Query 548 ACTT-GAAATTGCTAAGAGTCTT-ACAGAGAATCAAACTCTGGGAGAGATGTTATCAGGT 605 ||| ||| ||||||||| | || | ||||||||||||| |||||||||||||||||||| Sbjct 528 -CTTGGAACTTGCTAAGAAT-TTGAAAGAGAATCAAACTTTGGGAGAGATGTTATCAGGT 585 Query 606 TTCGACAGAAGGGTTAGCGAAACAGAGTGTGTAGAGGCATTGGTGATGATGGGTGAATTT 665 ||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| | Sbjct 586 TTCGAAAGAAGGGTTAGTGATACAGAGTGTGTAGAGGCATTAGTGATGATGGGTGAATCT 645 Query 666 GGTTTTGTAAAGACTTGTTTGTATTTCTATGAGTGGATGAGTTTGCAAGAACCTTCCCTT 725 |||||||| |||| |||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct 646 GGTTTTGTGAAGAGTTGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTT 705 Query 726 GCTTCGCCTCGTGCTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGAT 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 GCTTCGCCTCGTGCTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGAT 765 Query 786 TATATTCTGCTTCTGCTAAGTAATTTACCAGACAAGGAAGAGTTCAGAGATGTTCGTCTC 845 || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 766 TACATTCTGCTTCTGCTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGTTCGTCTC 825 Query 846 TATAATGCCGCCATTTCTGGGT-TATCAGCTTCTCAAAGGTATGATGATGCTTGGGAAGT 904 || ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| Sbjct 826 TACAATGCCGCCATTTCT-GGTCTCTCAGCTTCTCAAAGGTATGATGATGCTTGGGAAGT 884 Query 905 GTATGAAGCTATGAATAAGATCAATGTGTTTCCGGATAATGTTACATGTGCTATTA-TGA 963 ||||||||||||| ||||||||||||||| |||||| |||||||||||||||| || ||| Sbjct 885 GTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAATGTTACATGTGCTA-TATTGA 943 Query 964 TAACAACCATGAGGAAGGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGA 1023 | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 TCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGA 1003 Query 1024 TGAGCGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTAGCCTTGTGAAATCGTTTT 1083 |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1004 TGAGTGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTGGCCTTGTGAAGTCGTTTT 1063 Query 1084 GTGACGAAGGG-TTGAAAGAAGAAGCTCTTGTAATTCAAACAGAGATGGAGAAGAAAGGT 1142 |||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1064 GTGATGAAGGGCTT-AAAGAAGAAGCTCTTGTGATTCAAACAGAGATGGAGAAGAAAGGT 1122 Query 1143 ATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTATAATAAATCCAACCAC 1202 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1123 ATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTACAACAAATCCAACCAC 1182 Query 1203 ATAGAAGAAGTGGAAGGTCTTTTTGCTGAAATGAAAGCTAAAGGCTTGAAGCCTACAGCT 1262 |||||||||||||||||||||||| ||||||||| || |||||||||||||||| | ||| Sbjct 1183 ATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAAGGCTTGAAGCCTTCGGCT 1242 Query 1263 GCGACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATTGTAGAG 1322 || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1243 GCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATCGTTGAG 1302 Query 1323 ACATTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGT 1382 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1303 ACACTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGT 1362 Query 1383 TTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTG 1442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1363 TTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTG 1422 Query 1443 CGGATGAAAAAAGTAGGTTTGAAACCTTCTTCACATTCTTATACAGCTCTTATTCATGCT 1502 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1423 CGGATGAAGAAAGTAGGTTTGAAACCTTCTTCACATTCTTACACAGCTCTTATTCATGCT 1482 Query 1503 TACTCGGTTAGTGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGGATGGAG 1562 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1483 TACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGTAAGGAG 1542 Query 1563 GGGATCAAACCATCGGTTGAAACATACACATCACTTCTCGATGCATTCAGACGATCTGGT 1622 ||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||| || Sbjct 1543 GGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGATGCATTCAGACGATCAGGC 1602 Query 1623 GACACTGAAAAGCTGATGGAAATTTGGAAACTAATGTTGAGAGAAAAAATCAAAGGGACA 1682 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1603 GACACTGGAAAGCTGATGGAAATTTGGAAACTAATGCTGAGAGAAAAAATCAAAGGGACA 1662 Query 1683 CGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCA 1742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1663 CGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCA 1722 Query 1743 AGGGATGTTGTTTCTGAGTTTGGTAAAATGGGTTTGCAGCCAAGTGTTATGACTTACAAT 1802 ||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||| Sbjct 1723 AGGGATGTTGTATCTGAGTTTAGTAAAATGGGTTTGCAGCCGAGTGTCATGACTTACAAT 1782 Query 1803 ATGCTGATGAATGCCTACGCACGGGGAGGACAAGATGCGAAATTGCCACAGCTGTTGAAG 1862 |||||||||||||| ||||||||||||||||||||||| ||| |||| || ||||||||| Sbjct 1783 ATGCTGATGAATGCATACGCACGGGGAGGACAAGATGCAAAACTGCCGCAACTGTTGAAG 1842 Query 1863 GAAATGGCTGCTCTTAACATAAAACCTGATTCCATCACATATTCAACCATGATCTACGCG 1922 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1843 GAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATATTCAACAATGATCTACGCG 1902 Query 1923 TTTGTTCGTGTTAGAGACTTCAAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGC 1982 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1903 TTTGTTCGTGTTCGAGACTTCAAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGC 1962 Query 1983 GGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAAACAAGGTA 2042 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1963 GGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAGACAAGGCA 2022 Query 2043 AAGACACAGAACAGAAAGGATAAGACTGCCATTCTTGGTATAATTAATAGCAAATTCGGT 2102 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2023 AAGACAAAGAACAGAAAGGATAAGACTGCCATACTTGGTATAATTAATAGCAAATTCGGT 2082 Query 2103 AGGGTTAAGGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGAAGAGCCGA 2162 ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 2083 CGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGACGAATCGA 2142 Query 2163 ACTACTTCTCCTGATCGTCACCGATCTTGA 2192 ||||||||||||| |||||||||||||||| Sbjct 2143 ACTACTTCTCCTGGTCGTCACCGATCTTGA 2172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109738391370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5