BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949563
Length=293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50345.1 | Symbols: | Maternally expressed gene (MEG) famil... 135 2e-31
> AT5G50345.1 | Symbols: | Maternally expressed gene (MEG) family
protein | chr5:20497401-20497868 FORWARD LENGTH=391
Length=391
Score = 135 bits (73), Expect = 2e-31
Identities = 223/289 (77%), Gaps = 35/289 (12%)
Strand=Plus/Plus
Query 28 TCATCATCACATTTCGCTATCTTTTGCATCATCTTCGTTTCCTCT-TTTG-TCCTTCATG 85
||||||||||||||||||||||||||||||||| ||||||| | | |||| || ||||
Sbjct 7 TCATCATCACATTTCGCTATCTTTTGCATCATCCTCGTTTCAT-TGTTTGCTC-TTCAAC 64
Query 86 AATGTGAAA----A--CATGGTGGAGGATATTGA-CGCAAGCAAAATAGTTATATATA-A 137
||| ||||| | ||||| ||| || | || ||| |||||||||||| ||||| |
Sbjct 65 AATATGAAATTGGAAACATGGAAGAGAATCT-GAACGCCAGCAAAATAGTTGTATATCTA 123
Query 138 GTCACCGTGTGTTCGAACACGTTGCAGCAGCTTTAGCTTCTT-ATGGAATTGTCATTGTT 196
|||||||||||| ||| |||||| ||| |||||||| || | | || |||||||| |
Sbjct 124 -TCACCGTGTGTTAGAAAACGTTGTAGC---TTTAGCTTATTCAAG-AACTGTCATTGCT 178
Query 197 GCAGAGGAAAGT-T---T-------AA-GAAAATAAAAGTATGCGAGGCAG-AGTGTCTA 243
||||||| |||| | | || ||| ||||||||||||||| || |||||||
Sbjct 179 GCAGAGGGAAGTATCACTTTTGTTCAAAGAACATAAAAGTATGCGAGA-AGGAGTGTCTT 237
Query 244 AGACTTAACCCGCCGATAACTTCTTC-ATAGATCTTGAAAATTTGCAAA 291
||||||||||| ||| | || || | |||||| | ||||| |||||||
Sbjct 238 AGACTTAACCCACCGCGACCT-CTGCCATAGATATGGAAAACTTGCAAA 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13522024481
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5