BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949566
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1236 0.0
> AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48510.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:20505180-20506338 REVERSE LENGTH=1159
Length=1159
Score = 1236 bits (669), Expect = 0.0
Identities = 851/932 (91%), Gaps = 39/932 (4%)
Strand=Plus/Plus
Query 1 ACTTGTTTGTTAGACAAAACATGAATTTCCGGGGAGGTTGTTGTATTGCGAGGTACggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 ACTTGTTTGTTAGACAAAACATGAATTTCCGGGGAGGTTGTTGTATTGCGAGGTAC---- 66
Query 61 gtggtggtggtggtggtggtggtgCAAATGATATGTCAAAGGTTGATCGGCTTATGCTCC 120
|||||| |||||||| | | |||||||||||| |||||||||||| |||||||||
Sbjct 67 -----GGTGGTAGTGGTGGT-G-G-AAATGATATGTCGAAGGTTGATCGGATTATGCTCC 118
Query 121 GGTACCGTCCGATTGCACCGAGACCTGATTCCGGTGGATCTTCTGCTTCACCGACGGAGA 180
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 119 GGTACCGTCCGATTGCACCGAGACCTGATTCTGGTGGATCTCCTGCTTCACCGACGGAGA 178
Query 181 AAAATGGATCGGCGTTAACGAACGTTTCGTCGAAATCACGGAGAGGTAAGAGAAAATATT 240
| |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 AGAATGGATCGGTGATAACTAACGTTTCGTCGAGATCACGGAGAGGTAAGAGAAAATATT 238
Query 241 CAAAGGAGAATAACAGTAGCAGTAGCGGATCCGTTAATAGTAACGGTAACAGCAGACGAC 300
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 239 CAAAGGAGAATAATAGTAGCAGTACCGGATCCGTTAATAGTAACGGTAACAGCAAACGAC 298
Query 301 AGAGAAACGAAGAGACGAAGAACGGATCTGGT-GTCGGTGGAGAGATCGTGACGTTGCCT 359
|||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 299 AGAGAAACGATGAGACGAAGAACGGATCTGGTGGT-GGTAGAGAGATCGTGACGTTGCCT 357
Query 360 CTTCTCCCGGAGACTCCTGAGAAGAAAGAGTCGCCGTTGAAGGCTGTGGCGGTGCCGGAG 419
||||| || |||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 358 CTTCTTCCAGAGACTCCTGAGAAGAAAGACTCGCCGTTGAAGGCTAAGGCGGCGCCGGAG 417
Query 420 CTAGGTGCGGCGTCGTTGTGGC-------T--T-A---A-C----TCTAACAGACGTTAT 461
||||||||||| ||||||||| | | | | | | |||||||||||||
Sbjct 418 TTAGGTGCGGCGGCGTTGTGGCTGAGTTTTAATGACGGAGCTAGTTATAACAGACGTTAT 477
Query 462 CAGACGGAGTTAATGACGGAAACGGTTGTGTCGTCGGTGTTGACGGTGGAGTGTGTAACG 521
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 CAGACAGAGTTAATGACGGAAACGGTTGTGTCGTCGTTGTTGACGGTGGAGTGTGTAACG 537
Query 522 GAGAGATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGATGAGATTAAGATGAAT 581
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 538 GAGAGATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGAGGAGAGGAAGATGAAT 597
Query 582 -TTAGAGAGAGACACGTGTCCCGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGAC 640
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTT-GAGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGAC 656
Query 641 GAACCGG-TCGTACCGGGAATTGGTGGTTGGGAAAGATCATGAGCAGTGTGGTAAGATGA 699
||| ||| || ||| | || |||||||||||||||||||||||||||||| |||||||||
Sbjct 657 GAA-CGGTTCTTACAGAGAGTTGGTGGTTGGGAAAGATCATGAGCAGTGTAGTAAGATGA 715
Query 700 GTGTGTGG-TTAGTGATGAAGGAGAGGCCTTTGGTAACGTACCGGACTTTTACGTGTAGA 758
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 GTGTGTGGCTT-GTGATGAAGGAGAAGCCTTTGGTAACGTACCGGACTTTTACGTGTAGA 774
Query 759 ATGAGATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGAT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATGAGATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGAT 834
Query 819 GTTTGGAGGATGAGTGACGGTGGCTTTGCTTGGCGGCTTGATGTTGATGCTGCTCTTTGT 878
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 835 GTTTGGAGGATGAGTGACGGTGGCTTTGCGTGGCGGCTTGATGTTGATGCTGCACTTTGC 894
Query 879 CTCGGACGGTGAGGTTTTGGGCCGGTGGATTA 910
|| ||||||||||| || |||||| |||||||
Sbjct 895 CTTGGACGGTGAGGATT-GGGCCGTTGGATTA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44457220095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5